Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2006 ATGAAGGACGACGATGTCCTTCCAACGACGATAGCGAGTGCCGGGAAGAAAGAGAGCTCGGTTTCGAGTTTATTCGGCAAAGGACGCTACAAGTTTTGGGCATTAGCTGTCATTTTGTTGCTCGCATTTTGGTCCATGTTCACCGGCACCGTCTCTCTTCGATGGTCCGCCGGTAATCTCAACGGCCTATCTGATGATATCGATTTTAACATCCATGACGATCTCGATGTGCTTGAGATGGAGGAAAGGGAGAAGATAGTGAAGCACATGTGGGACGTTTATACAAATAATCGCCGGATCAGGCTACCGCGTTTCTGGCAAGAGGCATTCGAGGCTGCGTACGAGGACCTGACCAGTGAAGTGCCTGGTGATAGAGAGGCTGCAATTTCTGAGATCGCTCGGATGTCCGTGCACTCCATTGTTCTTGATACGCCTTCGGAGCAATCCACGACTGCACGAGAGTTCACAAAGAGGCAGAAAATAGCAGATAAAAGCAGGGAGACAGCTAACAAAACTGGGATAACGACGTCGATGAAGTGCCCCTACTGTTCGGCGGCGCAGGGGCGGTGCGCCACCACGAGCACCGGCAAGTCCATCACAGAGTGCATTTCCTGCGGCCGCGTTGTCGAAGAGCGACAATTCCAGCCCCACCACCTCTTCCACCTTCGCGCTCAAGATAACCCTCTTTGTCTCGTTACCTCCGACCTACCGACCCCTCCGATCCACCACCAGAACGATCAGGTTCTTGACCCTTTCGAGCCCACCGGCTTCATTACAGCCTTCTCCACGTGGTCCTTGGAGCACAATCCACTCTTCTTCCGCTCCTGCTTCTCCTTCTCCGGCCACCTTGCGGAGCTCGAGCGTACCCTAGAGTCTACGTCATCATCGAATTTGCCGTCGTCGTCGACAGTCGTGGTCGATAACCTTAGGGCTTATATGCAAATTATCGATGTGGCTTCTCTTTTGGGGTTGGATTACTATATTTCCGAGCACGCATTTAAGTTGTTTAGAGATTGTTGTTCGGCTACTTGTTTAAGGAACCGGAGTGTTGAGGCGCTCGCCACTGCTGCCCTTGTGCAGGCTATTAGGGAAGCCCAGGAGCCCCGAACCCTTCAGGAAATATCCATTGCAGCGAATGTACCCCAAAAAGAGATAGGGAAGTATATCAAGATTTTGGGAGAAGCTTTGCAATTAAGTCAACCCATCAACAGCAATTCCATATCAGTTCATATGCCAAGGTTCTGCACGCTTCTCCAACTCAATAAATCTGCTCAGGAACTGGCAACTCACATCGGGGAAGTTGTCATCAACAAATGCTTCTGCACTCGCAGGAATCCCATCAGCATCTCAGCCGCTGCTATATATTTAGCTTGCCAATTAGAAGACAAGCGAAAGACGCAAGCAGAAATTTGTAAGGTTACAGGTCTCACTGAAGTCACCCTCCGGAAAGTCTACAAGGAGCTACTAGAAAATTGGGATGATTTGCTTCCGTCTAATTATACTCCTGCTGTTCCTCCAGAAAGGGCATTTCCCACGACTGTAATTGCTTCAGGCCGTTCTGCAGCTCCTAAAGTTGATGCATTTGAAGGGGCTTCTTTAGAGAAAGACAAGCCGATGGAGACCAAACCTAATATATCCACCGAGATCTCAGAAATGGTTCATCCATCCAGAGTCAAAGAAGATAGTGAGAGTAAATTTGTATCCCGTGGGATGTATAACCCTGTAACTAACAAGTCCTCAACTTTTTGTCAACCACAGCCTCCTAAAGGGGATTCTATCCCAGGCCTCGGCAATTCGGTTATCAAGGAGAATGCACTGTTTCCAACAGGATTAAGGTGGAAAGTCTTTACAGAACCACCACTTTTCTCTCTCGCCCTCTCTCGCCCTCTCTCGCACACACACACAAGAGACAGACAGTGGAGGAAGTTGGGAAAGATGCTACTGTCATCATCCTCTTTATTGCGATCATTGCCGGTTAATCATTTGAATTTGGCATGCAAACCGGCAAATCCACGGACGGGATTGAAGGTTCAGGCCATGGCAAAGGAAGGAAGCGAGAGCGAAGGGGGCATTGCAGAGACGGTGGCTATAGCCGGTGGGTTAGTGGCGACCCCAGTGATCGGTTGGTCGCTGTACACCCTGAAGACAACCGGGTGCGGGCTGCCGCCGGGGCCAGGTGGGTCACTCGGCGCACTGGAAGGCGTCAGCTACTTGGCGGTGGTGGGCATCGTGGGTTGGTCTCTATACACGAAAACGAAAACTGGATCGGGTCTGCCGAACGGCCCTTTCGGGCTACTGGGCGCCGTCGAAGGTCTTTCATACTTGAGTTTGTTGGCCATCTTGGTCGTTTTTGGGTTGCAGTACTTTGAACAGGGCTACATCCCCGGCCCTCTTCCGGCCGATCAGTGCTTTGGTTGA 2418 50.79 MKDDDVLPTTIASAGKKESSVSSLFGKGRYKFWALAVILLLAFWSMFTGTVSLRWSAGNLNGLSDDIDFNIHDDLDVLEMEEREKIVKHMWDVYTNNRRIRLPRFWQEAFEAAYEDLTSEVPGDREAAISEIARMSVHSIVLDTPSEQSTTAREFTKRQKIADKSRETANKTGITTSMKCPYCSAAQGRCATTSTGKSITECISCGRVVEERQFQPHHLFHLRAQDNPLCLVTSDLPTPPIHHQNDQVLDPFEPTGFITAFSTWSLEHNPLFFRSCFSFSGHLAELERTLESTSSSNLPSSSTVVVDNLRAYMQIIDVASLLGLDYYISEHAFKLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASGRSAAPKVDAFEGASLEKDKPMETKPNISTEISEMVHPSRVKEDSESKFVSRGMYNPVTNKSSTFCQPQPPKGDSIPGLGNSVIKENALFPTGLRWKVFTEPPLFSLALSRPLSHTHTRDRQWRKLGKMLLSSSSLLRSLPVNHLNLACKPANPRTGLKVQAMAKEGSESEGGIAETVAIAGGLVATPVIGWSLYTLKTTGCGLPPGPGGSLGALEGVSYLAVVGIVGWSLYTKTKTGSGLPNGPFGLLGAVEGLSYLSLLAILVVFGLQYFEQGYIPGPLPADQCFG 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31987470 31996195 + ClG42_01g0200600.10 Clacu01g2006 241390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2006 805 Gene3D - 309 400 - -
Clacu01g2006 805 PRINTS Transcription initiation factor IIB signature 476 490 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Clacu01g2006 805 PRINTS Transcription initiation factor IIB signature 410 428 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Clacu01g2006 805 PRINTS Transcription initiation factor IIB signature 381 396 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Clacu01g2006 805 PRINTS Transcription initiation factor IIB signature 195 215 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Clacu01g2006 805 PRINTS Transcription initiation factor IIB signature 355 374 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Clacu01g2006 805 PRINTS Transcription initiation factor IIB signature 444 460 IPR000812 GO:0006352(InterPro)|GO:0070897(InterPro)
Clacu01g2006 805 FunFam Transcription initiation factor IIB 409 506 - -
Clacu01g2006 805 Pfam Transcription factor TFIIB repeat 311 392 IPR013150 GO:0017025(InterPro)
Clacu01g2006 805 Pfam Transcription factor TFIIB repeat 409 490 IPR013150 GO:0017025(InterPro)
Clacu01g2006 805 SUPERFAMILY Cyclin-like 310 400 IPR036915 -
Clacu01g2006 805 Gene3D - 409 505 - -
Clacu01g2006 805 CDD CYCLIN_TFIIB_archaea_like_rpt2 406 492 - -
Clacu01g2006 805 PANTHER OS03G0411600 PROTEIN 1 168 IPR010608 -
Clacu01g2006 805 MobiDBLite consensus disorder prediction 577 596 - -
Clacu01g2006 805 Pfam Protein of unknown function (DUF1195) 10 145 IPR010608 -
Clacu01g2006 805 SMART cyclin_7 409 490 IPR013763 -
Clacu01g2006 805 SMART cyclin_7 313 394 IPR013763 -
Clacu01g2006 805 SUPERFAMILY Cyclin-like 407 505 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2006 K03124 - - csv:101217129 806.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2006 Clacu-Chr1:31987470 Clacu08g1679 Clacu-Chr8:26447372 3.50E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g949 Blo04g00921 . . . Bpe15g00434 . . . . . Cma03g00760 . Car03g00694 . Sed14g1109 . Cpe10g00603 Bhi03g01283 Tan03g1969 Cmetu08g1776 . Hepe04g1500 . . Cla01g01897 Cam01g1987 Cec04g1638 Cco04g1704 Clacu01g2006 Cmu01g1877 Cre04g1558 . . . . Lsi01g00685 . . Cme08g00838 . . . . . . . . . Cmo03g00787 . . . . . . . . . . . . . . . . . . . . . . Csa06g03230 Chy02g00658 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29