Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2009 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACGAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTTACTATTCCCTGTTCTTCACCCTCTGATCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGTTGGTCTCGTGGACGGGGATTCCTCCGGCGACTCCTTCGGTGGTGGTTAAGGACACTCAAGTCCCCAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTACAGGGACTGAATCGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTATTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCATATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTTAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATTCTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCGGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTAATGGAAAATTGCGGATTCGAGTCAGTAAATCTCAGCCATTATGCAAAAAGCCAAGCTAAAATCCTTTTATGGAACTACGATTACAGCTCCGAGTATTCATTAATGGAATCCTCTGGGTTTCTCTCGTTGGCATGGAACGAAGTCCCAATCATTACAGTTTCTTCATGGCGTTGA 1803 49.47 MANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSDHNRIIFPDPPKSEPAVEPPLVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTESTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAYYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLMENCGFESVNLSHYAKSQAKILLWNYDYSSEYSLMESSGFLSLAWNEVPIITVSSWR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32012370 32014172 + ClG42_01g0200900.10 Clacu01g2009 241393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2009 600 ProSiteProfiles GRAS family profile. 228 600 IPR005202 -
Clacu01g2009 600 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 599 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu01g2009 600 Coils Coil 11 31 - -
Clacu01g2009 600 Pfam GRAS domain family 238 600 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2009 Clacu-Chr1:32012370 Clacu10g0438 Clacu-Chr10:5453557 2.60E-52 dispersed
Clacu01g0633 Clacu-Chr1:6666773 Clacu01g2009 Clacu-Chr1:32012370 1.20E-46 transposed
Clacu01g1625 Clacu-Chr1:28335173 Clacu01g2009 Clacu-Chr1:32012370 8.80E-17 transposed
Clacu03g0853 Clacu-Chr3:10114291 Clacu01g2009 Clacu-Chr1:32012370 7.90E-49 transposed
Clacu03g1334 Clacu-Chr3:25898272 Clacu01g2009 Clacu-Chr1:32012370 1.50E-39 transposed
Clacu05g1305 Clacu-Chr5:13327953 Clacu01g2009 Clacu-Chr1:32012370 5.00E-45 transposed
Clacu05g1649 Clacu-Chr5:24584293 Clacu01g2009 Clacu-Chr1:32012370 2.90E-13 transposed
Clacu06g1131 Clacu-Chr6:21508632 Clacu01g2009 Clacu-Chr1:32012370 9.20E-49 transposed
Clacu07g0918 Clacu-Chr7:23049116 Clacu01g2009 Clacu-Chr1:32012370 7.50E-179 transposed
Clacu08g0696 Clacu-Chr8:16651060 Clacu01g2009 Clacu-Chr1:32012370 1.50E-34 transposed
Clacu09g0100 Clacu-Chr9:936351 Clacu01g2009 Clacu-Chr1:32012370 3.00E-18 transposed
Clacu10g0369 Clacu-Chr10:4696612 Clacu01g2009 Clacu-Chr1:32012370 1.20E-42 transposed
Clacu11g1100 Clacu-Chr11:13857617 Clacu01g2009 Clacu-Chr1:32012370 2.00E-53 transposed
Clacu01g2009 Clacu-Chr1:32012370 Clacu07g0900 Clacu-Chr7:22596275 5.90E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47083 PF03514 GRAS 2.00E-109 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2009 - - - 0.0