Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2012 ATGGGGAATTTCTATATAAAGCGAGGAGAAAACAATCTCTCGAGGGATTTCTCGCTCGATCGTTCTTGCCCAACCTATGCTCGTTTCAAGGTTCCGAAAGTTTGCGTTTTGTCATTACTACATTGTAAAACACATAGAAATAGAAATGCGGATGAAGAACCTGTTTTGGGCCGGGCCGTGGATTGTAAAGCTGGTTTGATCTTCGCCATTGCTGAGCTGTTGGATTTGCAGATCTCTGTTAAGTTCTGGAATTTCAAGTGGAATCATTCTATCTTGACGGAAGGCTCTAGTGGCATTGCAATTGAATTACAAACATGTACTGCAAATTCCTTGACTGGCCACGGTCCAATAATGTATAGTGGGCTCTGTTCCAATGTGTTTGAAGAATTGTGGGGGGTCATACCCATTAGAGAATTCAATCTTATTTGGTGTGTGGGAGATGATTTTCTATGGAGTTTATGCAATTTTGCAGAATTGAACATAAGTGTTGTAGGATTTGAAGATCAGCCGGTGGTGATTCTTAATTTCAACGTAAATGGTTTTTACGTTAGTGGTGTCAACGTCACTCTTAGATGTCATCTTAATCATTTCAGCAAGAAGGGAAGAACTTATGAGTCTGCTGAGTTCTTCTTCCTCCCATTTTCAGCTCTGAGAACCGCTCTTTCGCTCCTCTCTCCCGATCGCAGTCTCAGGTTGAATTTGCTGGGAACCCATAACAATGGAGAAACCAATGATTCTTCACCGCAGGATGTGAAGATCAATGAACTAAGAGCTGCCTTAGGACACATATCCGGTCGTAGTTTAAAGTACTGTAATGATGCGTGCCTTCGGAGATATTTGGTTGCTCGGAATTGGGATCTTCACAAGGCAAAGAAAATGGTGGAGGACTCACTCAAATGGAGGGCAACTTATAAGCCTGAGGAAATCAGATGGCACGAAGTAGCACATGAAGGTGAAACGGGCAAATGTTTTAGAGCAAATTTCTACGACCGTTTTGGTCGAACAGTGCTCATATCCAGGCCAGGGATGCAGAATACAAACTCGCCGGAAGACAACGTTCGACATGTAGTGTATCTTTTAGAGAACACCATTTTGAACCTTCGTAATGGCCAAGAACAGATATCGTGGCTGATAGATTTTACTGGATTTACACTAAACACCAACATCTCTGTCAAAGCAGCAAGAGGCATTATTAACATACTGCAGAGCCACTATCCAGAAAGGCTTGCTATTTCGTTTCTCTACAATCCTCCAAGAATCTTTCAAGCCTTTTGGAAGGCTATCAGGTACTTTCTTGACCCGAAGATGGCTCAGAAAGTAAACTTTATATACCCCAACAACGAGGACAGTGTAGAGCTAATGAAATCTTTCTTCGATATGGAAAATCTTCCTAGTGTCTTTGGAGGAAAAGCCACTCTAACATATGACCATGAGGAGTTCTCAAAAATGATGGCAATAGACGATATGAGAACTGCCAAATTTTGGGAGTTAAACAACAAGCCTTGCCATAATATGAATGGGCATTCAGGCCTAGAGGTTGCACCAGAAGAGGCAATGCCCATCTCAGTTTCATCAGCTTAG 1581 42.19 MGNFYIKRGENNLSRDFSLDRSCPTYARFKVPKVCVLSLLHCKTHRNRNADEEPVLGRAVDCKAGLIFAIAELLDLQISVKFWNFKWNHSILTEGSSGIAIELQTCTANSLTGHGPIMYSGLCSNVFEELWGVIPIREFNLIWCVGDDFLWSLCNFAELNISVVGFEDQPVVILNFNVNGFYVSGVNVTLRCHLNHFSKKGRTYESAEFFFLPFSALRTALSLLSPDRSLRLNLLGTHNNGETNDSSPQDVKINELRAALGHISGRSLKYCNDACLRRYLVARNWDLHKAKKMVEDSLKWRATYKPEEIRWHEVAHEGETGKCFRANFYDRFGRTVLISRPGMQNTNSPEDNVRHVVYLLENTILNLRNGQEQISWLIDFTGFTLNTNISVKAARGIINILQSHYPERLAISFLYNPPRIFQAFWKAIRYFLDPKMAQKVNFIYPNNEDSVELMKSFFDMENLPSVFGGKATLTYDHEEFSKMMAIDDMRTAKFWELNNKPCHNMNGHSGLEVAPEEAMPISVSSA 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32020670 32035059 + ClG42_01g0201200.10 Clacu01g2012 241396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2012 526 Gene3D - 227 513 IPR036865 -
Clacu01g2012 526 PANTHER GH16843P 239 501 IPR052578 GO:0008526(PANTHER)
Clacu01g2012 526 SMART CRAL_TRIO_N_2 272 297 IPR011074 -
Clacu01g2012 526 SUPERFAMILY CRAL/TRIO domain 311 484 IPR036865 -
Clacu01g2012 526 SMART sec14_4 317 472 IPR001251 -
Clacu01g2012 526 Pfam CRAL/TRIO domain 320 469 IPR001251 -
Clacu01g2012 526 CDD SEC14 319 470 IPR001251 -
Clacu01g2012 526 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 329 475 IPR001251 -
Clacu01g2012 526 FunFam Phosphatidylinositol transfer protein 3 234 504 - -
Clacu01g2012 526 Pfam CRAL/TRIO, N-terminal domain 271 296 IPR011074 -
Clacu01g2012 526 SUPERFAMILY CRAL/TRIO N-terminal domain 242 313 IPR036273 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2012 K26544 - - csv:101219012 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2012 Clacu-Chr1:32020670 Clacu11g1715 Clacu-Chr11:28402752 1.80E-68 dispersed
Clacu05g0596 Clacu-Chr5:4966814 Clacu01g2012 Clacu-Chr1:32020670 1.10E-12 transposed
Clacu07g0921 Clacu-Chr7:23093196 Clacu01g2012 Clacu-Chr1:32020670 9.40E-114 transposed
Clacu01g2012 Clacu-Chr1:32020670 Clacu05g2084 Clacu-Chr5:29672598 1.20E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82