Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2019 ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACATCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAACTCCATCAGAAACAATGGCCACCGCACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTCGGTGGAGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGATGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1008 47.42 METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTSADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHRTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32094834 32095841 + ClG42_01g0201900.10 Clacu01g2019 241403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2019 335 MobiDBLite consensus disorder prediction 65 97 - -
Clacu01g2019 335 FunFam Zinc-finger homeodomain protein 2 261 332 - -
Clacu01g2019 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Clacu01g2019 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Clacu01g2019 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 96 329 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu01g2019 335 MobiDBLite consensus disorder prediction 14 41 - -
Clacu01g2019 335 SUPERFAMILY Homeodomain-like 267 332 IPR009057 -
Clacu01g2019 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Clacu01g2019 335 MobiDBLite consensus disorder prediction 80 97 - -
Clacu01g2019 335 Gene3D - 260 332 - -
Clacu01g2019 335 MobiDBLite consensus disorder prediction 1 48 - -
Clacu01g2019 335 NCBIfam homeobox domain, ZF-HD class 271 328 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2019 Clacu-Chr1:32094834 Clacu08g1304 Clacu-Chr8:22955505 5.80E-41 dispersed
Clacu01g2019 Clacu-Chr1:32094834 Clacu07g0850 Clacu-Chr7:21459035 3.50E-46 wgd
Clacu01g2019 Clacu-Chr1:32094834 Clacu08g1662 Clacu-Chr8:26322375 7.80E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47085 PF04770 ZF-HD_dimer 9.90E-31 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2019 - - - 0.0