Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2022 | ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATATTACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTTAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATGGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG | 1242 | 45.81 | MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDILRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQEWGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32105999 | 32107995 | - | ClG42_01g0202200.10 | Clacu01g2022 | 241406 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2022 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Clacu01g2022 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Clacu01g2022 | 413 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Clacu01g2022 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Clacu01g2022 | 413 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Clacu01g2022 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - | |
Clacu01g2022 | 413 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Clacu01g2022 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 413 | IPR025659 | - | |
Clacu01g2022 | 413 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
Clacu01g2022 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - | |
Clacu01g2022 | 413 | Pfam | F-box-like | 55 | 98 | IPR001810 | GO:0005515(InterPro) | |
Clacu01g2022 | 413 | Pfam | Tub family | 116 | 408 | IPR000007 | - | |
Clacu01g2022 | 413 | Gene3D | - | 48 | 101 | - | - | |
Clacu01g2022 | 413 | Gene3D | Tubby Protein; Chain A | 113 | 413 | IPR025659 | - | |
Clacu01g2022 | 413 | SUPERFAMILY | F-box domain | 49 | 98 | IPR036047 | GO:0005515(InterPro) | |
Clacu01g2022 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Clacu01g2022 | 413 | MobiDBLite | consensus disorder prediction | 278 | 300 | - | - | |
Clacu01g2022 | 413 | PANTHER | TUBBY-RELATED | 46 | 412 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2022 | Clacu-Chr1:32105999 | Clacu05g1148 | Clacu-Chr5:10543232 | 7.20E-118 | dispersed | |
Clacu01g2022 | Clacu-Chr1:32105999 | Clacu05g2058 | Clacu-Chr5:29510734 | 2.00E-144 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47086 | PF01167 | Tub | 1.20E-101 | CL0395 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2022 | K19600 | - | csv:101221704 | 784.637 |