Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2022 ATGTCCTTCAAAAGCCTTTTTCGTGACCTAAGGGAAATAAAAGATGGAATTAGAATCAAACCGAAACGAGGGGGAGAAGGGAGGAACTGGCAAAGTCGTACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAGCTTGCCTCCTGAGTTGCTTCTGGACATATTACGAAGAGTTGAAGAGAGTGAAACCTCATGGCCTGCTAGGACTGTTGTCCTTTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACACAGGAAATTGTTAAAACTCCCGAGCAGTGTGGAAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCTCCAATTCAGTGCTATGTTAGAAGGCACAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAGGTGATAAACTCTTATTAGCAGCCAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATGTGGGTAAATTAAGGTCCAATTTTTTTGGCACAAGGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGCAGGACAACAGAACAATCAATCAAATCGTAGGTTTCATGCCAAGCAAGTCTCTCCAACAATGTCAGCTTGTAACTACACTGTAGGGGCAATTTCTTATGAGCTTAATGTTCTACGAACTAGAGGACCCAGAAGAATGCGCTGTGTCATGCACTCAATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACCTCATTCTCGTCCTGTCTCGATGGCCATCACCACCCCCCTTTACCGGCTTCTAAAGGAAAGGAGCCAGACATAGATTTTAGTTCCACAAGTATCACTGTGGCACCAGTTCAAGAATGGGGAGAATCTTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCCTCTGTAAAGAATTTCCAACTCGTGGCCGATGTTGATCCAGCCCTCGACGTGTCAGTTGAAGAAAAAGAGAAGATAATATTGCAGTTTGGGAAAATCGGAAAGGACATCTTCACGATGGATTATCGCTACCCGCTCTCCACTTTCCAAGCCTTTGCTATCTGCTTAAGCAGCTTTGACACCAAACCAGCCTGTGAATAG 1242 45.81 MSFKSLFRDLREIKDGIRIKPKRGGEGRNWQSRTRSHIAPDEVPPQPEAIQQGQWASLPPELLLDILRRVEESETSWPARTVVLFCASVCKSWRNITQEIVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENEGDKLLLAAKRVRRATGTDFVISLVADDFSWACSTYVGKLRSNFFGTRFTMYDSQPPVLTAGQQNNQSNRRFHAKQVSPTMSACNYTVGAISYELNVLRTRGPRRMRCVMHSIPASCIQQGGNAPTPTSFSSCLDGHHHPPLPASKGKEPDIDFSSTSITVAPVQEWGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALDVSVEEKEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32105999 32107995 - ClG42_01g0202200.10 Clacu01g2022 241406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2022 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Clacu01g2022 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Clacu01g2022 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Clacu01g2022 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Clacu01g2022 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Clacu01g2022 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Clacu01g2022 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Clacu01g2022 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Clacu01g2022 413 MobiDBLite consensus disorder prediction 22 46 - -
Clacu01g2022 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Clacu01g2022 413 Pfam F-box-like 55 98 IPR001810 GO:0005515(InterPro)
Clacu01g2022 413 Pfam Tub family 116 408 IPR000007 -
Clacu01g2022 413 Gene3D - 48 101 - -
Clacu01g2022 413 Gene3D Tubby Protein; Chain A 113 413 IPR025659 -
Clacu01g2022 413 SUPERFAMILY F-box domain 49 98 IPR036047 GO:0005515(InterPro)
Clacu01g2022 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Clacu01g2022 413 MobiDBLite consensus disorder prediction 278 300 - -
Clacu01g2022 413 PANTHER TUBBY-RELATED 46 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2022 Clacu-Chr1:32105999 Clacu05g1148 Clacu-Chr5:10543232 7.20E-118 dispersed
Clacu01g2022 Clacu-Chr1:32105999 Clacu05g2058 Clacu-Chr5:29510734 2.00E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47086 PF01167 Tub 1.20E-101 CL0395 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2022 K19600 - csv:101221704 784.637