Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2023 ATGTCTGATGTAGTCTTCCACCGTCTGCCACGTGGCGCTGAGAGCGCGGCGGAGGACTTGACCGCGTTTCGGAATCCGACGAGGAGCTCCGGCAACGGCGGCAGTGGCCATTTGGACGGAGCCTCCAACGCAGCTTTCCGGGGAAAAATTCCTTTCGGACTCCGGCGAAAAGTTCAGAAACTGGCTTTCGTTTTGGCCGGAAAATTTGGAGAAGCACTACCTAATCTTCTCAAAGTGGTCATCGGAAGCGCCGCCATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCCAAAGCAATTCCTCCATCCCACCTCGTTTCATCTCCCGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTCCTCCTTCTAGAAAGTACCTCGGTTCCAAAATCTCATTCTCACTCACTCTTTCACATTGCTCCTCCTCATCCTTTGGATCTTCTTCATATTCTCTTGGCTCCTGCCCTTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGATTCGAACGGCAGTGCCTGGACTTGGAATCGCGCTTCGGAGAGTGCAATTGGAAACAACGTGGGGATTTTGGGCGGCGAAAAGGGAGCGGCGACTGTGGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGCATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTTGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATCTCTTGGTTATCAGAGGGGGAAGAGAATGATAAAGATCGACGCCTGATTTTTCATACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATTAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTGCATCTCCAACGGTCCACGGAGAGGAAATAGACAAGAAACCTCTTCTGCTGGAAACCCTTGTCCTATCATCATTGGAGAAGTTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCAACAAGAGATTGAACAACATTGTTTCCGTTCTTACAGAGAACCAACCTTTGTATCCTGAGCTTTATCTGTACAGTTCGGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCGTCCCCGCACGTTGCTGTGGATTGTGAATGTGCATATGGCAGATCATTTTTGCTGAACTATAAAATTTTGGATCCAGATGAGGGAGCGTTTGGATTGGCAATGTCGTCGTCGGTCGACGTTTTATCTCCCGCCTGTACGTCTAATAACAAACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGGGATGCCGCAGGCGGCGGCGGCGGCGGCGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACAAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAAAGATTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCAAGACCGAGTTAGGGGACCGAGTCAGGCACGAATCAGTGATGGATATACAGAGGAGTCTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATACACAAAGTGGATGATGATCCCATTCAAATTTTCCAAGAGGAACACCAATATTTCGAGAGTTCATATGAAACCATTGTCATGTTCTCTCTAAAAGCAGAGTCTCCATTACAATCAACATGGGCCCAGACCATGTCTCTGCTTGTAAACTGCTCAAACATGAAGCAATTGAAACAAATTCACGCTCAAATGATCAAAACAGAGATCGTCACAGAACCCAAATTAGCTACAAAGTTTCTAACCCTCTGCACTTCACCCCATTTCGGCGATTTGCTTTACGCGCAAAAGGTCTTCAATGGAATCACCAGCCCCAACACTTTCATGTGGAACGCCATTATAAGAGCTTACTGTAACAGTAACGAACCAGAATTAGCATTTCTCTTGTATCAGCAAATGCTTTCTTCTTCGGTACCGCACAACTCCTACACCTTCCCTTTCGTGCTCAAAGCTTGTCGTAATTTGTCGGCCATGGGTGAGGCCCTCCAAGTTCATGGACTGGTTTTCAAACTGGGATTTGGGTCGGATGTTTTTGCATTGAATGCTCTGCTTCATGTCTACACTTTGTGTGGTGACATTAATTATGCACGCCAACTGTTTGATAATATTCCTGAAAGAGATGTTGTTTCTTGGAACATAATGATTGATGGGTATATCAAATCTGGGGATGTAAAAACGGCTTATGGGATTTTCTTGGACATGCCATTGAAAAATGTGGTCTCGTGGACGTCGCTGATTTCGGGGCTTGTTGAGGCAGGACTGAGCGTAGAAGCTTTGAATCTTTGTTATGAGATGCAGAGTGCAGGATTTGAACTTGATGGTGTTGCTATTGCGAGTTTGCTTACTGCTTGTGCAAATCTTGGAGCGTTGGATCAAGGAAGATGGCTCCATTTCTATTTGCTCAACAATGGAGTCCACATCGATCGAGTAACTGGCTGTGCTCTGGTGAATATGTACTTAAAATGTGGGGAAATGGAAGAAGCCTTTAGATTGTTTGGGAAACTGAAGAGCGATCAGAAAGATGTGTATGTTTGGACGGCCATGATCGATGGCTTTGCCATTCATGGGCGTGGAGTGGAAGCTCTGGAATGGTTTAACCGAATGCAGAGAGAAGGAATAAGACCAAATTCCATCACTTTCACTGCAGTTTTAAGGGCCTGTAGCTATGCAGGACTGGTTGAAGAAGGAAAAGTGTTATTCGAGAGCATGAGATGTCTTTACAACTTGAGCCCATCTATTGAGCATTTTGGGTGTATGGTTGATCTTTTGGGTCGAGCTGGGCTGCTGGATAAAGCGAAGGAGTTGATCAAGAAGATGCCCATGAAACCTAATGCTGTAATATGGGGAGCTTTGCTAAAGGCCTGTTGGATTCATAGAGATTTTCTGGTGGGTAGCCAAATCGGAGCCCACCTGGTGGAAGTCGATTCAGATCATAGCGGGCGGTACATTCAGTTGGCTACCATTTTAGCTGCAGAAGGTAAATGGAAAGAAGCAGCTGAAGTGAGGTTGAAGATGAAGAATCTGAGAGTCCCAATTCCCCCCGGAAAGAGTTCAATAACTTTGAATGGCGTTGTTCATGAATTTCTTGCTGGGCATCAAGATCATCCACAGATGGAGCAGATTCATTTGAAACTGAAACAGGTTGCCGAGAGGCTACGACAAGATGAAAGTTATGAACCTGTAACTAAAGATTTATTACTTGATCTTGAGAATGAGGAGAAAGAGACTACGATGGCTCAACATAGCGAGAAGTTGGCTATTGCTTTTGGATTGATCAATACGAAACCAGGAGCGACGATTCGAGTTATTAAGAATCTTAGAGTCTGTAGAGATTGTCACACTGTTGCAAAGCTCATATCTCAAATCTATTGTAGAGAGATTATAATGCGAGATAGAGTTCGATTCCACCATTTTAGAGATGGGAATTGTTCTTGCAAAGATTATTGGTAG 4398 45.11 MSDVVFHRLPRGAESAAEDLTAFRNPTRSSGNGGSGHLDGASNAAFRGKIPFGLRRKVQKLAFVLAGKFGEALPNLLKVVIGSAAMEAPVRAFRPCVLNRRLFSKAIPPSHLVSSPESNRSAIFRQSSTYFHSPPSRKYLGSKISFSLTLSHCSSSSFGSSSYSLGSCPSNFLSSLPSLQSFGSQFASDYSNSFLSDSNGSAWTWNRASESAIGNNVGILGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSEGEENDKDRRLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPTVHGEEIDKKPLLLETLVLSSLEKFFSVALKLPDVNKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVLSHNFGSSPHVAVDCECAYGRSFLLNYKILDPDEGAFGLAMSSSVDVLSPACTSNNKLRSAKMNDLMTKSFLSYVELKKQAQRDAAGGGGGGGFDIESGGQELNPTEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMSGSLKLETFEGKLSKTELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSIHKVDDDPIQIFQEEHQYFESSYETIVMFSLKAESPLQSTWAQTMSLLVNCSNMKQLKQIHAQMIKTEIVTEPKLATKFLTLCTSPHFGDLLYAQKVFNGITSPNTFMWNAIIRAYCNSNEPELAFLLYQQMLSSSVPHNSYTFPFVLKACRNLSAMGEALQVHGLVFKLGFGSDVFALNALLHVYTLCGDINYARQLFDNIPERDVVSWNIMIDGYIKSGDVKTAYGIFLDMPLKNVVSWTSLISGLVEAGLSVEALNLCYEMQSAGFELDGVAIASLLTACANLGALDQGRWLHFYLLNNGVHIDRVTGCALVNMYLKCGEMEEAFRLFGKLKSDQKDVYVWTAMIDGFAIHGRGVEALEWFNRMQREGIRPNSITFTAVLRACSYAGLVEEGKVLFESMRCLYNLSPSIEHFGCMVDLLGRAGLLDKAKELIKKMPMKPNAVIWGALLKACWIHRDFLVGSQIGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKNLRVPIPPGKSSITLNGVVHEFLAGHQDHPQMEQIHLKLKQVAERLRQDESYEPVTKDLLLDLENEEKETTMAQHSEKLAIAFGLINTKPGATIRVIKNLRVCRDCHTVAKLISQIYCREIIMRDRVRFHHFRDGNCSCKDYW 1465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32113083 32125964 - ClG42_01g0202300.10 Clacu01g2023 241407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2023 1465 SUPERFAMILY t-snare proteins 563 782 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Clacu01g2023 1465 MobiDBLite consensus disorder prediction 17 40 - -
Clacu01g2023 1465 Pfam PPR repeat 1232 1256 IPR002885 -
Clacu01g2023 1465 Pfam PPR repeat 1025 1054 IPR002885 -
Clacu01g2023 1465 Pfam PPR repeat 1130 1154 IPR002885 -
Clacu01g2023 1465 Pfam PPR repeat 1056 1086 IPR002885 -
Clacu01g2023 1465 NCBIfam pentatricopeptide repeat 1025 1054 IPR002885 -
Clacu01g2023 1465 NCBIfam pentatricopeptide repeat 1056 1089 IPR002885 -
Clacu01g2023 1465 NCBIfam pentatricopeptide repeat 1159 1192 IPR002885 -
Clacu01g2023 1465 NCBIfam pentatricopeptide repeat 925 955 IPR002885 -
Clacu01g2023 1465 Coils Coil 660 680 - -
Clacu01g2023 1465 Gene3D - 725 821 - -
Clacu01g2023 1465 Gene3D Tetratricopeptide repeat domain 1006 1114 IPR011990 GO:0005515(InterPro)
Clacu01g2023 1465 Pfam E motif 1283 1335 IPR046848 -
Clacu01g2023 1465 FunFam Syntaxin 132 720 820 - -
Clacu01g2023 1465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1157 1191 IPR002885 -
Clacu01g2023 1465 MobiDBLite consensus disorder prediction 536 555 - -
Clacu01g2023 1465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 922 956 IPR002885 -
Clacu01g2023 1465 Pfam DYW family of nucleic acid deaminases 1374 1465 IPR032867 GO:0008270(InterPro)
Clacu01g2023 1465 MobiDBLite consensus disorder prediction 22 37 - -
Clacu01g2023 1465 CDD SNARE_syntaxin1-like 733 786 - -
Clacu01g2023 1465 FunFam Pentatricopeptide repeat-containing protein At5g66520 861 1010 - -
Clacu01g2023 1465 Gene3D Tetratricopeptide repeat domain 823 1005 IPR011990 GO:0005515(InterPro)
Clacu01g2023 1465 Gene3D Tetratricopeptide repeat domain 1115 1207 IPR011990 GO:0005515(InterPro)
Clacu01g2023 1465 SMART tSNARE_6 722 789 IPR000727 -
Clacu01g2023 1465 Pfam PPR repeat family 1156 1203 IPR002885 -
Clacu01g2023 1465 Pfam PPR repeat family 921 968 IPR002885 -
Clacu01g2023 1465 Pfam Eukaryotic protein of unknown function (DUF829) 228 465 IPR008547 -
Clacu01g2023 1465 SMART SynN_4 559 686 IPR006011 GO:0016020(InterPro)
Clacu01g2023 1465 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 733 789 IPR000727 -
Clacu01g2023 1465 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 1128 1359 - -
Clacu01g2023 1465 Gene3D - 559 690 - -
Clacu01g2023 1465 CDD SynN 567 714 IPR006011 GO:0016020(InterPro)
Clacu01g2023 1465 Coils Coil 571 591 - -
Clacu01g2023 1465 PANTHER OS07G0578800 PROTEIN-RELATED 1054 1354 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Clacu01g2023 1465 Gene3D Tetratricopeptide repeat domain 1208 1364 IPR011990 GO:0005515(InterPro)
Clacu01g2023 1465 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1023 1057 IPR002885 -
Clacu01g2023 1465 Pfam Syntaxin 567 762 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0810 Clacu-Chr1:8824805 Clacu01g2023 Clacu-Chr1:32113083 4.70E-60 dispersed
Clacu01g2023 Clacu-Chr1:32113083 Clacu03g1806 Clacu-Chr3:31808684 9.70E-133 dispersed
Clacu10g1804 Clacu-Chr10:31661178 Clacu01g2023 Clacu-Chr1:32113083 1.30E-47 dispersed
Clacu01g2023 Clacu-Chr1:32113083 Clacu06g1726 Clacu-Chr6:27881821 3.60E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2023 - - - 0.0