Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2023 | ATGTCTGATGTAGTCTTCCACCGTCTGCCACGTGGCGCTGAGAGCGCGGCGGAGGACTTGACCGCGTTTCGGAATCCGACGAGGAGCTCCGGCAACGGCGGCAGTGGCCATTTGGACGGAGCCTCCAACGCAGCTTTCCGGGGAAAAATTCCTTTCGGACTCCGGCGAAAAGTTCAGAAACTGGCTTTCGTTTTGGCCGGAAAATTTGGAGAAGCACTACCTAATCTTCTCAAAGTGGTCATCGGAAGCGCCGCCATGGAAGCTCCAGTTAGGGCATTTCGCCCCTGCGTTCTTAATCGCCGCCTCTTCTCCAAAGCAATTCCTCCATCCCACCTCGTTTCATCTCCCGAATCTAATCGGAGCGCGATTTTCCGGCAATCTTCAACCTATTTCCATTCTCCTCCTTCTAGAAAGTACCTCGGTTCCAAAATCTCATTCTCACTCACTCTTTCACATTGCTCCTCCTCATCCTTTGGATCTTCTTCATATTCTCTTGGCTCCTGCCCTTCTAATTTTCTTTCTTCTTTACCCTCATTACAATCCTTCGGCTCTCAATTCGCGTCTGATTACTCCAATTCATTTCTATCCGATTCGAACGGCAGTGCCTGGACTTGGAATCGCGCTTCGGAGAGTGCAATTGGAAACAACGTGGGGATTTTGGGCGGCGAAAAGGGAGCGGCGACTGTGGTTTTGTTAGGTTGGCTTGGGGCAAAAACTAAGCATCTGAGGAGGTACGTGGAATGGTACAATGCGAGGGGCATCAACGCTTTGACGTTTGTGGTGGATCCGAGAGAGTTTCTTTGGTTCGCGTTGAGTCGGAAAGTTGAGCAGCGGATTTCGGATTTGGCGGTTGAACTCATCTCTTGGTTATCAGAGGGGGAAGAGAATGATAAAGATCGACGCCTGATTTTTCATACTTTTAGCAACACGGGCTGGTTTGTATACGGAGCCATTCTTGAAATTTTGCAGGGGCGGAAAGATCTGTTGGAGAAGATTAAAGGGTGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTGCATCTCCAACGGTCCACGGAGAGGAAATAGACAAGAAACCTCTTCTGCTGGAAACCCTTGTCCTATCATCATTGGAGAAGTTCTTCTCGGTTGCTTTGAAGTTGCCAGACGTCAACAAGAGATTGAACAACATTGTTTCCGTTCTTACAGAGAACCAACCTTTGTATCCTGAGCTTTATCTGTACAGTTCGGGAGATAAAGTTGTACCTTCCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACAGGAAGGAAGGTTTTGTCTCACAACTTCGGCTCGTCCCCGCACGTTGCTGTGGATTGTGAATGTGCATATGGCAGATCATTTTTGCTGAACTATAAAATTTTGGATCCAGATGAGGGAGCGTTTGGATTGGCAATGTCGTCGTCGGTCGACGTTTTATCTCCCGCCTGTACGTCTAATAACAAACTCAGATCGGCGAAGATGAACGATTTAATGACGAAATCATTCTTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGGGATGCCGCAGGCGGCGGCGGCGGCGGCGGCTTCGACATTGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGATGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAGTTGACATTCAAAAACTAAATCAAGAAGCGAAATCAACTCACAACGCCAAAATCCTCCGCGGAATAAGAGACAGAATCGACTCCGACATGGTATCAATCCTCCGCAGAGCAAGAATCCTCAAAGAAAAATTGGCCTCTCTCGACCAATCCAACACCGCCAACCGCCTGATCTCCGTCGCGTACGGCGAAGGAACCGCTGTGGACCGGACAAGAACTTCAGTCACAAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTTCAAAGATTGAGAGAAAAAGTTGTGGCGGATCACAAGGAGGATCTGAGAAGAAGATATTTTGGTGCAAATGGGGAACAACCCAGTGACGAACAAGTGGAGAAGATTATGTCTGGGAGTTTGAAATTGGAAACGTTTGAAGGGAAATTGAGCAAGACCGAGTTAGGGGACCGAGTCAGGCACGAATCAGTGATGGATATACAGAGGAGTCTGAATAAGCTTCATCAGGTGTTTTTGGATATGGCGATTTTGGTTGAGAGTGAAGGGGAGAAGATGGAGGACATTGAGGAGAATGTAGCGAAAGCTGGGAAGTTCATCAATGGCGGAACTCGAAGCCTTCATTATGCGAACCAGATGAAGAGGAAGAACAAGAAATGGGTGTATTGGGTTTGGGCTATCATTTTTGTTATATTGCTTGTTTGCATTGTTTCAATACACAAAGTGGATGATGATCCCATTCAAATTTTCCAAGAGGAACACCAATATTTCGAGAGTTCATATGAAACCATTGTCATGTTCTCTCTAAAAGCAGAGTCTCCATTACAATCAACATGGGCCCAGACCATGTCTCTGCTTGTAAACTGCTCAAACATGAAGCAATTGAAACAAATTCACGCTCAAATGATCAAAACAGAGATCGTCACAGAACCCAAATTAGCTACAAAGTTTCTAACCCTCTGCACTTCACCCCATTTCGGCGATTTGCTTTACGCGCAAAAGGTCTTCAATGGAATCACCAGCCCCAACACTTTCATGTGGAACGCCATTATAAGAGCTTACTGTAACAGTAACGAACCAGAATTAGCATTTCTCTTGTATCAGCAAATGCTTTCTTCTTCGGTACCGCACAACTCCTACACCTTCCCTTTCGTGCTCAAAGCTTGTCGTAATTTGTCGGCCATGGGTGAGGCCCTCCAAGTTCATGGACTGGTTTTCAAACTGGGATTTGGGTCGGATGTTTTTGCATTGAATGCTCTGCTTCATGTCTACACTTTGTGTGGTGACATTAATTATGCACGCCAACTGTTTGATAATATTCCTGAAAGAGATGTTGTTTCTTGGAACATAATGATTGATGGGTATATCAAATCTGGGGATGTAAAAACGGCTTATGGGATTTTCTTGGACATGCCATTGAAAAATGTGGTCTCGTGGACGTCGCTGATTTCGGGGCTTGTTGAGGCAGGACTGAGCGTAGAAGCTTTGAATCTTTGTTATGAGATGCAGAGTGCAGGATTTGAACTTGATGGTGTTGCTATTGCGAGTTTGCTTACTGCTTGTGCAAATCTTGGAGCGTTGGATCAAGGAAGATGGCTCCATTTCTATTTGCTCAACAATGGAGTCCACATCGATCGAGTAACTGGCTGTGCTCTGGTGAATATGTACTTAAAATGTGGGGAAATGGAAGAAGCCTTTAGATTGTTTGGGAAACTGAAGAGCGATCAGAAAGATGTGTATGTTTGGACGGCCATGATCGATGGCTTTGCCATTCATGGGCGTGGAGTGGAAGCTCTGGAATGGTTTAACCGAATGCAGAGAGAAGGAATAAGACCAAATTCCATCACTTTCACTGCAGTTTTAAGGGCCTGTAGCTATGCAGGACTGGTTGAAGAAGGAAAAGTGTTATTCGAGAGCATGAGATGTCTTTACAACTTGAGCCCATCTATTGAGCATTTTGGGTGTATGGTTGATCTTTTGGGTCGAGCTGGGCTGCTGGATAAAGCGAAGGAGTTGATCAAGAAGATGCCCATGAAACCTAATGCTGTAATATGGGGAGCTTTGCTAAAGGCCTGTTGGATTCATAGAGATTTTCTGGTGGGTAGCCAAATCGGAGCCCACCTGGTGGAAGTCGATTCAGATCATAGCGGGCGGTACATTCAGTTGGCTACCATTTTAGCTGCAGAAGGTAAATGGAAAGAAGCAGCTGAAGTGAGGTTGAAGATGAAGAATCTGAGAGTCCCAATTCCCCCCGGAAAGAGTTCAATAACTTTGAATGGCGTTGTTCATGAATTTCTTGCTGGGCATCAAGATCATCCACAGATGGAGCAGATTCATTTGAAACTGAAACAGGTTGCCGAGAGGCTACGACAAGATGAAAGTTATGAACCTGTAACTAAAGATTTATTACTTGATCTTGAGAATGAGGAGAAAGAGACTACGATGGCTCAACATAGCGAGAAGTTGGCTATTGCTTTTGGATTGATCAATACGAAACCAGGAGCGACGATTCGAGTTATTAAGAATCTTAGAGTCTGTAGAGATTGTCACACTGTTGCAAAGCTCATATCTCAAATCTATTGTAGAGAGATTATAATGCGAGATAGAGTTCGATTCCACCATTTTAGAGATGGGAATTGTTCTTGCAAAGATTATTGGTAG | 4398 | 45.11 | MSDVVFHRLPRGAESAAEDLTAFRNPTRSSGNGGSGHLDGASNAAFRGKIPFGLRRKVQKLAFVLAGKFGEALPNLLKVVIGSAAMEAPVRAFRPCVLNRRLFSKAIPPSHLVSSPESNRSAIFRQSSTYFHSPPSRKYLGSKISFSLTLSHCSSSSFGSSSYSLGSCPSNFLSSLPSLQSFGSQFASDYSNSFLSDSNGSAWTWNRASESAIGNNVGILGGEKGAATVVLLGWLGAKTKHLRRYVEWYNARGINALTFVVDPREFLWFALSRKVEQRISDLAVELISWLSEGEENDKDRRLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSASPTVHGEEIDKKPLLLETLVLSSLEKFFSVALKLPDVNKRLNNIVSVLTENQPLYPELYLYSSGDKVVPSESIELLIEKRKKTGRKVLSHNFGSSPHVAVDCECAYGRSFLLNYKILDPDEGAFGLAMSSSVDVLSPACTSNNKLRSAKMNDLMTKSFLSYVELKKQAQRDAAGGGGGGGFDIESGGQELNPTEEQNLSLFFEQVDEIKTQMEETTNLLVDIQKLNQEAKSTHNAKILRGIRDRIDSDMVSILRRARILKEKLASLDQSNTANRLISVAYGEGTAVDRTRTSVTNGLRVKLREMMNEFQRLREKVVADHKEDLRRRYFGANGEQPSDEQVEKIMSGSLKLETFEGKLSKTELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESEGEKMEDIEENVAKAGKFINGGTRSLHYANQMKRKNKKWVYWVWAIIFVILLVCIVSIHKVDDDPIQIFQEEHQYFESSYETIVMFSLKAESPLQSTWAQTMSLLVNCSNMKQLKQIHAQMIKTEIVTEPKLATKFLTLCTSPHFGDLLYAQKVFNGITSPNTFMWNAIIRAYCNSNEPELAFLLYQQMLSSSVPHNSYTFPFVLKACRNLSAMGEALQVHGLVFKLGFGSDVFALNALLHVYTLCGDINYARQLFDNIPERDVVSWNIMIDGYIKSGDVKTAYGIFLDMPLKNVVSWTSLISGLVEAGLSVEALNLCYEMQSAGFELDGVAIASLLTACANLGALDQGRWLHFYLLNNGVHIDRVTGCALVNMYLKCGEMEEAFRLFGKLKSDQKDVYVWTAMIDGFAIHGRGVEALEWFNRMQREGIRPNSITFTAVLRACSYAGLVEEGKVLFESMRCLYNLSPSIEHFGCMVDLLGRAGLLDKAKELIKKMPMKPNAVIWGALLKACWIHRDFLVGSQIGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKNLRVPIPPGKSSITLNGVVHEFLAGHQDHPQMEQIHLKLKQVAERLRQDESYEPVTKDLLLDLENEEKETTMAQHSEKLAIAFGLINTKPGATIRVIKNLRVCRDCHTVAKLISQIYCREIIMRDRVRFHHFRDGNCSCKDYW | 1465 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32113083 | 32125964 | - | ClG42_01g0202300.10 | Clacu01g2023 | 241407 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2023 | 1465 | SUPERFAMILY | t-snare proteins | 563 | 782 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Clacu01g2023 | 1465 | MobiDBLite | consensus disorder prediction | 17 | 40 | - | - | |
Clacu01g2023 | 1465 | Pfam | PPR repeat | 1232 | 1256 | IPR002885 | - | |
Clacu01g2023 | 1465 | Pfam | PPR repeat | 1025 | 1054 | IPR002885 | - | |
Clacu01g2023 | 1465 | Pfam | PPR repeat | 1130 | 1154 | IPR002885 | - | |
Clacu01g2023 | 1465 | Pfam | PPR repeat | 1056 | 1086 | IPR002885 | - | |
Clacu01g2023 | 1465 | NCBIfam | pentatricopeptide repeat | 1025 | 1054 | IPR002885 | - | |
Clacu01g2023 | 1465 | NCBIfam | pentatricopeptide repeat | 1056 | 1089 | IPR002885 | - | |
Clacu01g2023 | 1465 | NCBIfam | pentatricopeptide repeat | 1159 | 1192 | IPR002885 | - | |
Clacu01g2023 | 1465 | NCBIfam | pentatricopeptide repeat | 925 | 955 | IPR002885 | - | |
Clacu01g2023 | 1465 | Coils | Coil | 660 | 680 | - | - | |
Clacu01g2023 | 1465 | Gene3D | - | 725 | 821 | - | - | |
Clacu01g2023 | 1465 | Gene3D | Tetratricopeptide repeat domain | 1006 | 1114 | IPR011990 | GO:0005515(InterPro) | |
Clacu01g2023 | 1465 | Pfam | E motif | 1283 | 1335 | IPR046848 | - | |
Clacu01g2023 | 1465 | FunFam | Syntaxin 132 | 720 | 820 | - | - | |
Clacu01g2023 | 1465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1157 | 1191 | IPR002885 | - | |
Clacu01g2023 | 1465 | MobiDBLite | consensus disorder prediction | 536 | 555 | - | - | |
Clacu01g2023 | 1465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 922 | 956 | IPR002885 | - | |
Clacu01g2023 | 1465 | Pfam | DYW family of nucleic acid deaminases | 1374 | 1465 | IPR032867 | GO:0008270(InterPro) | |
Clacu01g2023 | 1465 | MobiDBLite | consensus disorder prediction | 22 | 37 | - | - | |
Clacu01g2023 | 1465 | CDD | SNARE_syntaxin1-like | 733 | 786 | - | - | |
Clacu01g2023 | 1465 | FunFam | Pentatricopeptide repeat-containing protein At5g66520 | 861 | 1010 | - | - | |
Clacu01g2023 | 1465 | Gene3D | Tetratricopeptide repeat domain | 823 | 1005 | IPR011990 | GO:0005515(InterPro) | |
Clacu01g2023 | 1465 | Gene3D | Tetratricopeptide repeat domain | 1115 | 1207 | IPR011990 | GO:0005515(InterPro) | |
Clacu01g2023 | 1465 | SMART | tSNARE_6 | 722 | 789 | IPR000727 | - | |
Clacu01g2023 | 1465 | Pfam | PPR repeat family | 1156 | 1203 | IPR002885 | - | |
Clacu01g2023 | 1465 | Pfam | PPR repeat family | 921 | 968 | IPR002885 | - | |
Clacu01g2023 | 1465 | Pfam | Eukaryotic protein of unknown function (DUF829) | 228 | 465 | IPR008547 | - | |
Clacu01g2023 | 1465 | SMART | SynN_4 | 559 | 686 | IPR006011 | GO:0016020(InterPro) | |
Clacu01g2023 | 1465 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 733 | 789 | IPR000727 | - | |
Clacu01g2023 | 1465 | FunFam | Pentatricopeptide repeat-containing protein, chloroplastic | 1128 | 1359 | - | - | |
Clacu01g2023 | 1465 | Gene3D | - | 559 | 690 | - | - | |
Clacu01g2023 | 1465 | CDD | SynN | 567 | 714 | IPR006011 | GO:0016020(InterPro) | |
Clacu01g2023 | 1465 | Coils | Coil | 571 | 591 | - | - | |
Clacu01g2023 | 1465 | PANTHER | OS07G0578800 PROTEIN-RELATED | 1054 | 1354 | IPR045215 | GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER) | |
Clacu01g2023 | 1465 | Gene3D | Tetratricopeptide repeat domain | 1208 | 1364 | IPR011990 | GO:0005515(InterPro) | |
Clacu01g2023 | 1465 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 1023 | 1057 | IPR002885 | - | |
Clacu01g2023 | 1465 | Pfam | Syntaxin | 567 | 762 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0810 | Clacu-Chr1:8824805 | Clacu01g2023 | Clacu-Chr1:32113083 | 4.70E-60 | dispersed | |
Clacu01g2023 | Clacu-Chr1:32113083 | Clacu03g1806 | Clacu-Chr3:31808684 | 9.70E-133 | dispersed | |
Clacu10g1804 | Clacu-Chr10:31661178 | Clacu01g2023 | Clacu-Chr1:32113083 | 1.30E-47 | dispersed | |
Clacu01g2023 | Clacu-Chr1:32113083 | Clacu06g1726 | Clacu-Chr6:27881821 | 3.60E-119 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2023 | - | - | - | 0.0 |