Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2026 ATGATTGATCCCATGCGGAAGAAAAACAGAGTTCATGTCTCTCGGGAAGGTGGAGGACGAAGAACAAGGGTGAATATGGAAAACAGTGCTGGAGGAGGAAATTCTGCAAATATCGGATTCCCTAGGATTAGGCTCAATGAAAGAATTCTTTCTTCCATGTCTCGAAGATCTGTCGCCGCTCACCCTTGGCACGATTTGGAGATTGGACCTGGTGCACCGTCAGTTTTCAATTGTGTTGTTGAAATTGGCAAAGGCAGCAAGGTTAAATACGAGCTTGACAAGGCCAGTGGCCTTATCAAAGTCGACCGCGTACTTTACTCATCAGTTGTTTACCCACACAATTATGGTTTCATCCCACGTACAATTTGTGAAGACAGTGATCCTATGGATGTTTTGGTACTGATGCAGGAGCCTGTGCTACCTGGATCTTTCCTCCGAGCTCGTGCTATTGGATTGATGCCTATGATTGATCAAGGAGAAAGGGATGACAAAATCATAGCAGTATGTGCTGATGACCCTGAATTCCGCCACTATACAGACATCAAGGAGATTCCCCCACACCGGCTAGCCGAAATTCGCCGATTCTTCGAGGACTACAAGAAGAACGAAAACAAGAAAGTCGATGTGGAAGACTTCCTGCCAGCGGAGGCTGCCACTGATGCCATCAAGTACTCCATGGATTTGTATGCTGCCTACATAGTTGAAAGCTTGAGGCAGTAA 720 46.25 MIDPMRKKNRVHVSREGGGRRTRVNMENSAGGGNSANIGFPRIRLNERILSSMSRRSVAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKASGLIKVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKEIPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAATDAIKYSMDLYAAYIVESLRQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32136776 32139227 + ClG42_01g0202600.10 Clacu01g2026 241410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2026 239 SUPERFAMILY Inorganic pyrophosphatase 55 234 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Clacu01g2026 239 MobiDBLite consensus disorder prediction 1 22 - -
Clacu01g2026 239 Hamap Inorganic pyrophosphatase [ppa]. 74 230 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Clacu01g2026 239 FunFam Soluble inorganic pyrophosphatase 4 57 235 - -
Clacu01g2026 239 PANTHER INORGANIC PYROPHOSPHATASE 41 239 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0004427(PANTHER)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0006796(InterPro)|GO:0006796(PANTHER)
Clacu01g2026 239 Pfam Inorganic pyrophosphatase 78 229 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Clacu01g2026 239 CDD pyrophosphatase 75 227 IPR008162 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Clacu01g2026 239 Gene3D Inorganic pyrophosphatase 57 235 IPR036649 GO:0000287(InterPro)|GO:0004427(InterPro)|GO:0005737(InterPro)|GO:0006796(InterPro)
Clacu01g2026 239 MobiDBLite consensus disorder prediction 1 35 - -
Clacu01g2026 239 ProSitePatterns Inorganic pyrophosphatase signature. 125 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2026 K01507 - - csv:101222890 456.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2026 Clacu-Chr1:32136776 Clacu04g0888 Clacu-Chr4:23210947 8.20E-98 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000387 7 6 4 6 6 3 5 2 3 3 2 3 6 3 2 5 3 4 6 2 3 4 2 2 3 2 3 12 11 3 126