Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2027 ATGACAACTTTTCTGCCTGAGCTTAATGGCGGTGGTCCTTTTGTAGCTCAAACTATCTACGACGACGTTTATGGCGGTCCTCCCAAGTTTGGAGTCTCTGCTTTGTCTCCTCGTTTCGAAGACTACGGTGAGATTTTCGGGAGCTTCCACGCCCTTCGTGCTTCCTCGATTCCGATTCTTGATCTTCCTGCTGTCGATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCTGCATTTGACTATTCGGAAGTTTTTGGCGGGTTTGATGGTCTGGATTTTGCGATTTCTTATGACGAACTGGTTGGTCCATCCAAGGCCGTTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGAATCTTTGTCAGACTGTTCGGATCATTCTGGAAATTCTCATTGTATGTCAAATGGAGACTCTAATCAGTCATTTGGAGGAAGCACTGAGTTTTGCATATCGTATAACAAGGTTAACCGAGAAAGCAATGGAAATATATCAAATGGGAAGATACACGTAACCCAGTTGGAGATGCGTCCTGGATTCTCATATCTGGTTGATGAAGCAAACCCCTCGCCGAAGGCAACAGATGATGATCCATCACTGCAGACCAATGATGATAACTATCTCAATATAGATTTTGATACAGGAAAGGTGAAGGGCAAACATCCAAGGAACACAATGCCACCCCTAGTGGACAGTAATGACTCTGGACCGTTATTCGAGGATAGCCTTATTTCTCAAAATGGATGTGGTAGAGATGTTTGTCATTCTCACGAGGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAGCCCTCTCAAGTGCCACCGCCTTCTCGACCTCCTCCCAAGTTTGCTACCAAAAAGGGGGACTACTCTAAAAGGACTTTGAGTTGTGGGGAAGCTGCTTCTGAAATAATTTCGGACGACCATTCTCTTCCTTTATTTGATGTGGAGGTAGATGCTAGCTCATCTGCAGCGGCCTCTGCTGCAGCGATGAAAGAAGCAATGGATAAAGCTCAAGCACAGTTACAAAATGCAAAAGATTTGTGGGGGAGGAAGAAGGAAGGGGTCCATGGACGGATGAGACTGGATTCAAGAAATGATATGAGAGAAAAGGAAGGAAATTTGACTAAGATTCCAAATCGATTTAAGAGTTGGGCCAATGAAAGTGCGCAGGGTATTGGGGAAATTCATGGCAACGAAATGAATTTGCCTGCTAGAGAGGAGAGGCACAAGGATGTGAGGGCAACTGAAGTTTGTTCAACACACTATGGAGAAGAGGAACTTTTAACAGCTGCTGAAAAGACCGTATCAATTAGAAGTGGGAGTAGATTTCTTGTGTCCGAGAACTATGATTGTTGCAGTGAATGGAAAGATGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCTGAAAAGGAATTTGAGTCGCTGAGTAATGATGCAATTTCCAACTTTGTGACTGGACAAATGGAAATAGAGACCAATGCATGGGAGAACGATAAAGACCAAGACAAGAAAGCAAAACCATTCCATACAGCTCATGTTCTGAATGAGGAGGTGAAGCATTTGGAGAATCTGGTCCAGGGAAAGGAGGAAGATAAGATAAAACGAAAGCCAAATAAAAACGAGACTAGGCAAAAAGAGCAGGTGAAATTAAAAATTCACCAAGGTGTTTGTGATCTTGAAGCAAATGATAGAAAATTTGAAGTTGCTCAAGAGTTTACGGAAGTAAAAAAGCAAATGTTTTATGCTAGTGAACCAGAGAAACGTGAAAAGCCTATTGAGTTTAGACAACTGGACAGTGAGCTAAAAGTTGAGCAACCTGTTTCACCAAGGGATATTGAACAAGAAAAGAAAAAGGTTGAAAGAAAGGAAAATGGAAATATTCTCAAGGAGTCTCATAGAAAAGAAAACAATGCAAACAAAATGGAAGCCACTGAGAATGAGAAAAGAGAGATGCCCACAGAGGCTTCTGAAAGGGAAAAACTTGAGCAAAAAATGAAGGTGTTCTTTGAGCAACCAGATGATAAGAAAAGACTGAATTTGGTTCTTGAGGACGACAACTTTAAGGGACAGATGGATCATGAAAGACAACTGGAAGGAGTTCATGGGATGGAAGATCATGGGGAAAGGGGAAAGGAGGCTGCCAAAGTTGGAGTAAGTGAGACACCTGAATTAGCTCATGAGAGAGAAGATGGCAACAAATGGCCACAAGATTTTCAGTACAGAGAAGTATGTGAAAAAGGAGTTGATGATTCATTTCAGCATTTGAACATTGAAGGCATGCCAAGAGATGTGGGTAAGTGTAAAGTGACTCCGATGTTGGTTAAAGATTCACAAGATAGCGCAGATCTCAAGGGTACAAGTTTGGAGTATGATGAATTAGAGACATTGGAGGACAGACACAAAGTAAATTCAACAATAGGATCTCAAGTATATGTGGAAGTGAGTGATTTGGGGACATCTGCTGCTGCATGTCAAATGAACAATGACAAAGACCATTTACCTATGGGACTAGCATGTCCAACGGGAATGTCTGAAGAATTCTCTGTTGTAGATGAAAGTGGAGAGAGGAAGACCATAGTTACAGTTAATGAAAATCTTCAATTTAACAAAAATCCTTGTGTGCCGAGTGTATGCCAGGCAGAGGTAGAACACTGTAAACTTCCAGTTGAAATGGAAGATGCAGATATTCAACTTTCTTTTGATGAATTGACTAAAAGAGCAGCCAAAGAAACAGGCTTTCAGCCCGGACCTGGACATACACAATCAGAACCAACTAATTCGGAAGATGCACTTTCATCTGAAAACTCAACATGCATGGATGCGGGAGAGAACGTAGTTAAGATTGAAGATATGAAAACATCACTTCCTCTGGACAGAAGCAATGAGAAAGCAGGACAGGCTGATGAATGCATGGAAGAGTTTGTAGGGAGAAAGAAGTCTGTTACCAGAATGGGTTCTGATCCTGAACATCCAGGAAGCAACTTGTTCTGTTGTATGGAAGATAAAGTGAAGCCCTCTGACCAAGTTGAAGATAAGGGACAGAAAGTGTCAGTTCAGGGGGTCAATGTAAGGGCTGAAAAAGGAAGTGGATTGAAGTCAACTTGGCCAAATATTTCAGAAAGGACGCAGAAGAGTGGGGAATTCTCCCGTGAGGTCAATGCAAATCAGGCCCCAGAAAGAAAGGAAAAGATTGTAAACCAGAGCCATACATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGTGAAGCAGAATTTGAGAACGACATTCTTCGAAGATTGGAAGAAGAGAGGGAGAGGGAAAGAGAGAGAGAAAAGGATAGAATGCCTATTGACAGAATTTCTCTTGAACCACGAGATAGAGTAGGTACCGAAGCTCGTGAAAGGGCAGAAAGGGCTGCTCTGGAGAGGATGACTGCTGAAGCCCGACAAAGAGCATTGGCTGAGGCACGTGAAAGATTGGAAAAGGCATGTGCAGAGGCGAGAGAAAATTCATTGGCTGGGAAGGCGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCCGCTGTAGAAAGAGCAACTGCAGAGGCCAGGGAGCGAGCTGCGGAGAAAGCCATGTCTGACAAGACTTCCTTTGGGGCAAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCTTCTTCCAGAAATAATGAAATGAGACAGAAGTCTTCATCCTCCGGTCAGCCCAGCCTACAATCTCTGAGCTTTGGCTCTGCTGCGGCTTCAAGATATGCCTACTACTCGGCTTATGATGAGAGGAATGAGGGTGTTGATGGTGAATCGCCTCAAAGGTGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCAAAAGCTCTGGCAGAAAAAAATATGCGTGATCTTCTGGCACAAAGAGAGCAAGCTGAGAGAAATAGATTAGCTGAGACATTGGATGCTGATGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACATTGCAATATATCCTTGCACCTGATAGTGGTTGGCAGCCAATTCCCTTAACAGAAGTTATAACCGCCGCTGCTGTAAAGAAAGCGTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTGCAACAACGGGGTGCAAGTATTCAGCAAAAATATATATGCGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCAGAGGAGCGGTAG 4257 43.32 MTTFLPELNGGGPFVAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRASSIPILDLPAVDESEVFFDARSSAFDYSEVFGGFDGLDFAISYDELVGPSKAVDDGSSDEAWTPAGTESLSDCSDHSGNSHCMSNGDSNQSFGGSTEFCISYNKVNRESNGNISNGKIHVTQLEMRPGFSYLVDEANPSPKATDDDPSLQTNDDNYLNIDFDTGKVKGKHPRNTMPPLVDSNDSGPLFEDSLISQNGCGRDVCHSHEDFITVSEISLRTEPSQVPPPSRPPPKFATKKGDYSKRTLSCGEAASEIISDDHSLPLFDVEVDASSSAAASAAAMKEAMDKAQAQLQNAKDLWGRKKEGVHGRMRLDSRNDMREKEGNLTKIPNRFKSWANESAQGIGEIHGNEMNLPAREERHKDVRATEVCSTHYGEEELLTAAEKTVSIRSGSRFLVSENYDCCSEWKDATEFFELARADISEKEFESLSNDAISNFVTGQMEIETNAWENDKDQDKKAKPFHTAHVLNEEVKHLENLVQGKEEDKIKRKPNKNETRQKEQVKLKIHQGVCDLEANDRKFEVAQEFTEVKKQMFYASEPEKREKPIEFRQLDSELKVEQPVSPRDIEQEKKKVERKENGNILKESHRKENNANKMEATENEKREMPTEASEREKLEQKMKVFFEQPDDKKRLNLVLEDDNFKGQMDHERQLEGVHGMEDHGERGKEAAKVGVSETPELAHEREDGNKWPQDFQYREVCEKGVDDSFQHLNIEGMPRDVGKCKVTPMLVKDSQDSADLKGTSLEYDELETLEDRHKVNSTIGSQVYVEVSDLGTSAAACQMNNDKDHLPMGLACPTGMSEEFSVVDESGERKTIVTVNENLQFNKNPCVPSVCQAEVEHCKLPVEMEDADIQLSFDELTKRAAKETGFQPGPGHTQSEPTNSEDALSSENSTCMDAGENVVKIEDMKTSLPLDRSNEKAGQADECMEEFVGRKKSVTRMGSDPEHPGSNLFCCMEDKVKPSDQVEDKGQKVSVQGVNVRAEKGSGLKSTWPNISERTQKSGEFSREVNANQAPERKEKIVNQSHTSKGKESERVRSEAEFENDILRRLEEEREREREREKDRMPIDRISLEPRDRVGTEARERAERAALERMTAEARQRALAEARERLEKACAEARENSLAGKAATMEARVKAERAAVERATAEARERAAEKAMSDKTSFGARERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSLSFGSAAASRYAYYSAYDERNEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILAPDSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 1418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32149514 32156659 + ClG42_01g0202700.10 Clacu01g2027 241411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 918 943 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 610 668 - -
Clacu01g2027 1418 SUPERFAMILY Chaperone J-domain 1276 1417 IPR036869 -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1195 1225 - -
Clacu01g2027 1418 Gene3D DnaJ domain 1291 1418 IPR036869 -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1062 1091 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 116 132 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 923 943 - -
Clacu01g2027 1418 Coils Coil 1084 1111 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 272 295 - -
Clacu01g2027 1418 Coils Coil 1283 1318 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 186 239 - -
Clacu01g2027 1418 Coils Coil 519 539 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1122 1143 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1040 1060 - -
Clacu01g2027 1418 CDD DnaJ 1366 1411 IPR001623 -
Clacu01g2027 1418 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 16 1418 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Clacu01g2027 1418 FunFam Auxilin-related protein 1 1289 1418 - -
Clacu01g2027 1418 ProSiteProfiles dnaJ domain profile. 1354 1418 IPR001623 -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1030 1091 - -
Clacu01g2027 1418 Coils Coil 1177 1197 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 107 132 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1271 1290 - -
Clacu01g2027 1418 Coils Coil 1144 1171 - -
Clacu01g2027 1418 Coils Coil 333 353 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1226 1251 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 197 212 - -
Clacu01g2027 1418 MobiDBLite consensus disorder prediction 1195 1251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2027 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2027 Clacu-Chr1:32149514 Clacu01g2562 Clacu-Chr1:35873981 1.80E-27 dispersed
Clacu04g0222 Clacu-Chr4:6912854 Clacu01g2027 Clacu-Chr1:32149514 5.90E-57 transposed
Clacu08g0744 Clacu-Chr8:17330819 Clacu01g2027 Clacu-Chr1:32149514 1.50E-49 transposed
Clacu01g2027 Clacu-Chr1:32149514 Clacu05g2055 Clacu-Chr5:29476031 1.10E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41