Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2035 ATGGAGGTTTCCAAAATACTCCATATGAATTCAGGAGTTGGAGACAAAAGCTATGCCAAAAATTCCTTACTTCAGCAAAAGGCAATATCTATGGCGTGGCCAATCATAAAGGAAGCCATTGAAGACTTCTGCAATGAAAACATTCCAACCACTTTAACCATGGTGGATTTGGGCTGTTCTTCAGGACCAAACACTCTTATGATTGTCTCCAAATTAATCAAACAATTTCATAAAAACCTTCACAGTAAACCACTCCAATATCAAATCTTCTTCAATGATCTACCTGCAAACGATTTCAATGCCATTTTTAGATCGTTGCCAAATTTCTTGGAAGATTTGAAGAACCAAATTGGAACTGATTTTGGAAACTGTTTCTTCAATGGAGTGCCGGGTTCTTTTTATGGAAGGCTCTTTCCCAACAAAACTTTGCATTTTGTTCATTCTTCTTATACTCTCCATTGGCTCTCTCAGGTACCTGAAGGGATGGAGATAATAAACAAAGGGAACATATTCATAGACTGTACAAGTCCAGAGAATGTGGTTGAAGGCTTTTACAGTCAATTTCAAAAGGACTTTTCACTGTTTTTAAAGTGTCGTGGAGAAGAAATAGTAGGTGGTGGTCGAATGGTTCTTACCATATTAGGAAGAACAGATGAATATCCAACAAACAAAGATTTTTGTTACGCTCTTGCACTTCTCAATTTAGCTTTCAAGAACATGGTTGGAGAGGGGATCTTGGAAGAGGAGAAAGTTGATAGATTCAATATTCCAATCTTCATGCCAAATCCAGAGGAAATAAAAGTAGAGGTTTTGAAAGAAGGAAGCTTCATCATAAATTATCTTGAAGTGTCAACAATTGATTGGAACTTCTACAATAATGATGAATTTGATGGATCAAATGTGTGTACTGTTGATAGCTGCAGTTATTATTTTGCAAAATGTATGAGAGCAGTGTTTGAACCAATTTTAATTCCTAACTTTGGAGAAGGTATTTTGGAAGAATTATTTGAGAGAATATGCTCCAAAGAATGGGGCAAAGTTGGCATCAGCCTCGGCCTCGGCCCAACTGCTTTCTCCCCTCTTTTTGGGCATTCATCTATAAGAAATGGACGGTTGGTGTCGGCTTCTGCTTCGGCCTCCTGGTTGGCTAATTGGGCTATCTTCTTGAATGACCTCCATGGAAATGACTTCAATGCCATCTTTACATCATTGCCAAACTTCCTTGAAGATTTGAGGACCCAAATTGGAGGTGATTTTGGTCTATGTTTCTTCAATGGTGTGCCTGGTTCTTTCTATGCCAGACTCTTTCCCAGCAACACTCTGCATTTTTTTCATTCATCTAGTAGTCTCCATTGGCTCTCTCGGGTTCCAATGGGGATAGAGAATAACAAAGGGAACATTTACATAGGTAGTACAAGTCCAAAGAGTGTGGTTGAAGCTTATTATAAGCAATTTCAAAAGGATTTTTCAATGTTTTTGAAGTGTCGAGGTGAGGAATTGGTAATGGGTGGACGTATGGTTTTAACATTAGTTGGAAGAATAAGTGAAGATCCATCAAAGTCTGGAGCTCACTATATTTTGGAGCTTTTGGCTTTAACTCTCAATACTATGGTAGCTGAGGGAATTGTGGAAGAGAAAATGGCAGATTCATTCAATATTCCAAGCTATATGCCATCGCCAAGGGAAGTGGAAGCGGAGGTTGTGAATGAAGGAAGTTTCATCCTCAATCTATTGGAAGTTTCAAGGATTAACTTAAACATTAACAAAACTGAATCCTGCCCCATGGCCAACACTGATGGCTATGATTTTGCCAAGTGTGTGCAATCTGTGGCTGAACCACTTTTGATTCATCATTTTGGAGAAGCCATTGTGGAAGAGTTATTTTGCCGATACAAGAAAATAGTTGCCGATTGCATGGCAAAAGAGAAGGTTATGGAATGCATCAACCTCACTATCTCATTAACTAAAATCAAATCATCAAAAGTTACTACAACTATTACTATGCCATGTGATGAAAGTTCCAAAAGGTGA 2031 38.4 MEVSKILHMNSGVGDKSYAKNSLLQQKAISMAWPIIKEAIEDFCNENIPTTLTMVDLGCSSGPNTLMIVSKLIKQFHKNLHSKPLQYQIFFNDLPANDFNAIFRSLPNFLEDLKNQIGTDFGNCFFNGVPGSFYGRLFPNKTLHFVHSSYTLHWLSQVPEGMEIINKGNIFIDCTSPENVVEGFYSQFQKDFSLFLKCRGEEIVGGGRMVLTILGRTDEYPTNKDFCYALALLNLAFKNMVGEGILEEEKVDRFNIPIFMPNPEEIKVEVLKEGSFIINYLEVSTIDWNFYNNDEFDGSNVCTVDSCSYYFAKCMRAVFEPILIPNFGEGILEELFERICSKEWGKVGISLGLGPTAFSPLFGHSSIRNGRLVSASASASWLANWAIFLNDLHGNDFNAIFTSLPNFLEDLRTQIGGDFGLCFFNGVPGSFYARLFPSNTLHFFHSSSSLHWLSRVPMGIENNKGNIYIGSTSPKSVVEAYYKQFQKDFSMFLKCRGEELVMGGRMVLTLVGRISEDPSKSGAHYILELLALTLNTMVAEGIVEEKMADSFNIPSYMPSPREVEAEVVNEGSFILNLLEVSRINLNINKTESCPMANTDGYDFAKCVQSVAEPLLIHHFGEAIVEELFCRYKKIVADCMAKEKVMECINLTISLTKIKSSKVTTTITMPCDESSKR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32185218 32201789 - ClG42_01g0203500.10 Clacu01g2035 241419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2035 676 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 340 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Clacu01g2035 676 Gene3D Vaccinia Virus protein VP39 21 287 IPR029063 -
Clacu01g2035 676 Pfam SAM dependent carboxyl methyltransferase 383 656 IPR005299 GO:0008168(InterPro)
Clacu01g2035 676 Pfam SAM dependent carboxyl methyltransferase 39 341 IPR005299 GO:0008168(InterPro)
Clacu01g2035 676 Gene3D Vaccinia Virus protein VP39 371 590 IPR029063 -
Clacu01g2035 676 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 384 657 IPR029063 -
Clacu01g2035 676 Gene3D - 6 340 IPR042086 -
Clacu01g2035 676 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 342 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2035 K21483 - - csv:101206474 660.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2035 Clacu-Chr1:32185218 Clacu01g2037 Clacu-Chr1:32226927 2.60E-109 dispersed
Clacu01g2035 Clacu-Chr1:32185218 Clacu01g2036 Clacu-Chr1:32210585 5.70E-181 tandem
Clacu01g2035 Clacu-Chr1:32185218 Clacu05g2050 Clacu-Chr5:29442728 1.20E-80 wgd
Clacu01g2035 Clacu-Chr1:32185218 Clacu07g0858 Clacu-Chr7:21618788 3.50E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1013 . . . . . . Bma09g00087 . . . . . . . . . . . . . . . . . Cla01g01929 Cam01g2014 Cec04g1672 Cco04g1736 Clacu01g2035 Cmu01g1910 Cre04g1587 . Cone12ag0775 . . . . . . Blo05g00805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03263 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218