Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2036 ATGGAGGTTTCCAAAATACTCCATATGAATTCAGGAGTTGGAGACAAAAGCTATGCCAAAAATTCCTTACTTCAGCAAAAGGCAATATCTATGGCGTGGCCAATCATAAAGGAAGCCATTGAAGACTTCTGCAATGAAAACATTCCAACCACTTTAACCATGGTGGATTTGGGCTGTTCTTCAGGACCAAACACTCTTATGATTGTCTCCAAATTAATCAAACAATTTCATAAAAACCTTCACAGTAAACCACTCCAATATCAAATCTTCTTCAATGATCTACCTGCAAACGATTTCAATGCCATTTTTAGATCGTTGCCAAATTTCTTGGAAGATTTGAAGAACCAAATTGGAACTGATTTTGGAAACTGTTTCTTCAATGGAGTGCCGGGTTCTTTTTATGGAAGGCTCTTTCCCAACAAAACTTTGCATTTTGTTCATTCTTCTTATACTCTCCATTGGCTCTCTCAGGTACCTGAAGGGATGGAGATAATAAACAAAGGGAACATATTCATAGACTGTACAAGTCCAGAGAATGTGGTTGAAGGCTTTTACAGTCAATTTCAAAAGGACTTTTCACTGTTTTTAAAGTGTCGTGGAGAAGAAATAGTAGGTGGTGGTCGAATGGTTCTTACCATATTAGGAAGAACAGATGAATATCCAACAAACAAAGATTTTTGTTACGCTCTTGCACTTCTCAATTTAGCTTTCAAGAACATGGTTGGAGAGGGGATTCTGAAAGAGGAGAAAGTTGATAGATTCAATATTCCAAATTTCATGCCAAGTCTAAAGGAAGTAAAAGCAGAGGTTTTAAAAGAAGGAAGTTTCATACTAAATGAACTTGGAGTCTCAAGAATTGATTGGAACTTCTACAATACTGAATTTGATGGATCAAATGTGTTAGTTGATAGCAGTTCCAATATTGCAAAATGCATTAGATCTGTTACTGAACCACTTTTGATTCCTCACTTTGGAGAAGCCATTGTTGAAGATTTATTTCAGAGAGCTAGGTTTCGATCCTGA 1023 36.56 MEVSKILHMNSGVGDKSYAKNSLLQQKAISMAWPIIKEAIEDFCNENIPTTLTMVDLGCSSGPNTLMIVSKLIKQFHKNLHSKPLQYQIFFNDLPANDFNAIFRSLPNFLEDLKNQIGTDFGNCFFNGVPGSFYGRLFPNKTLHFVHSSYTLHWLSQVPEGMEIINKGNIFIDCTSPENVVEGFYSQFQKDFSLFLKCRGEEIVGGGRMVLTILGRTDEYPTNKDFCYALALLNLAFKNMVGEGILKEEKVDRFNIPNFMPSLKEVKAEVLKEGSFILNELGVSRIDWNFYNTEFDGSNVLVDSSSNIAKCIRSVTEPLLIPHFGEAIVEDLFQRARFRS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32210585 32213164 - ClG42_01g0203600.10 Clacu01g2036 241420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2036 340 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 6 336 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Clacu01g2036 340 Gene3D Vaccinia Virus protein VP39 21 287 IPR029063 -
Clacu01g2036 340 Pfam SAM dependent carboxyl methyltransferase 39 336 IPR005299 GO:0008168(InterPro)
Clacu01g2036 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 336 IPR029063 -
Clacu01g2036 340 Gene3D - 6 336 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2036 K21483 - - csv:101209890 518.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2036 Clacu-Chr1:32210585 Clacu06g0891 Clacu-Chr6:11647317 2.60E-105 dispersed
Clacu01g2035 Clacu-Chr1:32185218 Clacu01g2036 Clacu-Chr1:32210585 5.70E-181 tandem
Clacu01g2036 Clacu-Chr1:32210585 Clacu01g2037 Clacu-Chr1:32226927 1.60E-107 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1015 . . . . . . Bma09g00088 . . . . . . . . . . . . . . . . . Cla01g01930 Cam01g2015 . Cco04g1737 Clacu01g2036 Cmu01g1911 Cre04g1588 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03264 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218