Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2040 ATGGCCTTTTGGTTCCTCTTCGACCATCATTTTCCTAAAAACAGTACTCACAGACCTGACCCTGACACTCCAAGAACTTACCCTTCTGGGTTTCCCCAAATGGCAGGAATTCTTTCCATAACTATTTTAGTGTTGGTTTCAAAAGTTTGGTGGAGACAGAGGAGCAAGAATGTTGGAGGAATTCCTGGTTACTTGGGGTTACCTTTTGTAGGGGAAACCTTCTCTTTTCTTTCTGCTAATAACAGTACCAAAGGGTGTTACCACTTTGTCAGGCTCCGCAGGTTGTGGCATGGAAGATGGTTCAAGACAAGGCTATTCGGAAAGATACACGTGTTTGTTCCAAGTGCAGAAGGAGCAAAAACAATATTTGCCAATGATTTTGTCCAATTCAACAAGGGATACGTGAAATCCATGGGAGATGCTGTTGGAGAGAAGAGTTTACTATGTGTTTCCCATGAGAATCACAGAAGGATTAGACGTCTTCTAGCAGATCCTTTCTCCATGACTTCTCTGTCTAAGTTTGTCAAAGAATTTGACGACATGCTCTCCAAAAGGCTAAAGAAACTAGAAAAAGATGGGAAAAGTTTTGTACTGCTTGATTTTAGCATGAAGATAACATTCGATTCCATGTGCAATATGCTAATGAGTCTAAGAGATGAATCTACACTCAGACAGATTGAGAAAGACTGTACAGCCGTCTCTGATGCCATGTTATCTTTCCCATTCATGATTCCAGGAACTAGATACTACAAAGGCATCAAGGCACGAAACCGACTCATGGAAAGATTTAGAGAGATAATTTCCCGACGGCGGAGGGGAGAGGAGTTACCAGAAGACTTCCTACAGTCGATGTTGCGGAGAGATTCATATCCTTCAAATGAAAAGCTGGATGACTCAGAGATAATGGATAACCTATTGACACTGATAATTGCAGGCCAAACCACCACAGCTGCTGCTATGATGTGGAGTATCAAATTCCTGGACGAGAACAGAGAGGCCCAAGAAAGGCTACGGGAAGAACAATTGTCAATTCTAGGAAAGAAGGAACATGGAGAATTGCTTACCCTTGAAGATCTTAACAAAATGTCCTACGGTTCAAAGGTTGTCAAAGAGACGTTGAGAATGTCCAATGTTTTGCTGTGGTTTCCTCGTGTGGCACTAGGAGATTGCAGATTAGAAGGTTTTGAAATAAAGGAAGGATGGCATGTGAACATCGATGCAACATGTATTCATTATGACCCAGATTTGTACAAGGACCCCATGCAATTCAACCCTTCCAGATTTGATGAAATTCAAAAGCCATACAGTTTCATACCTTTTGGATCTGGGCCCAGGACCTGTCTTGGAATTAACATGGCCAAATTAACAATGTTGGTCTTCTTGCACAGAATGACTGGAGGGTACAAGTGGACGGTTGATGATCCAGATCCTTGCCTTGAAAAGAAGGCACACATCCCTAGACTGAGAAGCGGCTGCCCCATTACTTTGAAGACCTTGTAA 1500 42.4 MAFWFLFDHHFPKNSTHRPDPDTPRTYPSGFPQMAGILSITILVLVSKVWWRQRSKNVGGIPGYLGLPFVGETFSFLSANNSTKGCYHFVRLRRLWHGRWFKTRLFGKIHVFVPSAEGAKTIFANDFVQFNKGYVKSMGDAVGEKSLLCVSHENHRRIRRLLADPFSMTSLSKFVKEFDDMLSKRLKKLEKDGKSFVLLDFSMKITFDSMCNMLMSLRDESTLRQIEKDCTAVSDAMLSFPFMIPGTRYYKGIKARNRLMERFREIISRRRRGEELPEDFLQSMLRRDSYPSNEKLDDSEIMDNLLTLIIAGQTTTAAAMMWSIKFLDENREAQERLREEQLSILGKKEHGELLTLEDLNKMSYGSKVVKETLRMSNVLLWFPRVALGDCRLEGFEIKEGWHVNIDATCIHYDPDLYKDPMQFNPSRFDEIQKPYSFIPFGSGPRTCLGINMAKLTMLVFLHRMTGGYKWTVDDPDPCLEKKAHIPRLRSGCPITLKTL 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32256964 32260835 - ClG42_01g0204000.10 Clacu01g2040 241424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2040 499 Pfam Cytochrome P450 66 480 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PANTHER CYTOCHROME P450 26 62 468 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
Clacu01g2040 499 FunFam cytochrome P450 90A1-like isoform X1 51 499 - -
Clacu01g2040 499 PRINTS E-class P450 group I signature 406 430 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 SUPERFAMILY Cytochrome P450 51 497 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2040 499 CDD CYP90-like 93 496 - -
Clacu01g2040 499 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Clacu01g2040 499 Gene3D Cytochrome P450 51 499 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2040 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2040 Clacu-Chr1:32256964 Clacu09g0966 Clacu-Chr9:9067824 2.50E-80 dispersed
Clacu01g2040 Clacu-Chr1:32256964 Clacu08g1646 Clacu-Chr8:26215904 5.30E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1026 . . . . . . . . . . Cma03g00726 . Car03g00664 . Sed11g1049 . Cpe10g00632 Bhi03g00926 Tan03g2013 Cmetu03g0864 . Hepe04g1544 . . Cla01g01935 Cam01g2019 Cec04g1677 Cco04g1741 Clacu01g2040 Cmu01g1916 Cre04g1592 . . . . Lsi01g00654 . . Cme08g00877 . . . . . . . . . Cmo03g00751 . . . . . . . . . . . . . . . . . . . . . . Csa06g03271 Chy02g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013553 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26