Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g2055 | ATGAGAAATCTGCGAATTCTTTCCCCTCATTTCTCCAGGATTCGCAGAACCGTCGCTCAAAACCCTTGCTCCGATTCTCCGTCCACTCTTAACTTAAATCTTCTTGGATTGGAGAGTTTTGCATCGTCGTCATCTCTGAACCATCGGAATTACACCACTGCTTCACCTGAATCAAGACCACCTCATTCTGAGAGAGTTTCGGCCATTGTGGATGAGATCTCCGGTCTCACGCTACTCGAGGTTGCGGACCTCACCGAGGTTCTACGAGAAAAATTGGATGTGAAGGAGATGCCGGTAATGGCAGTGATGATGCCTGGGATGGGGTTCGGCGGCTTGCAAGGTGCCGGTAAGGGTGGTCCTGGAGCGAAAGGCGGTGAAGAGAAAAAGGCGGAGAAGACGGCGTTCGATGTGAAGCTTGAAGCTTTTGATGCTGCGTCCAAAATAAAGATCATTAAGGAAGTGCGAACGTTTACGAATTTGGGGTTGAAGGAGGCTAAGGATTTGGTGGAGAAAGCGCCTACGCTTCTGAAGAAGGGGGTGACTAAAGAGGAAGCTGATACGATCATTGCCAAGATGAAGGAGTGGTCTATTCTATTTGTTATTCCTGCGCGCTCTGTTTCTTATGATTATATAGCATTGGCTACTTCTTCTGTGAGCTTTGTGAACTACATCTTAATTCCGTTTGTTTCTTCTACCAACAGGATGCTGCAGAAAATACCAAGCTTTTATGGCAATTTTCAAGTCAGAGCAGCAGTTGAAGATATATTTCATTTGGGATGGATGAGGACATGGGATTGTTTGGTTTCCTTCAAAACATATGGAGCATTCTTTATCAGAACTTTCCATATTTTTTGCCTCGACCTGGAATTGTATTGGTGGATGGATATTTCTTGGTACTTGCCTTTGCCGGATATGTGGCAGTGGGAGAATGCCACCGCCGGTGCCCTCGCCGGATTTGCCACCGTCGCCGCCATGCATCCTCTAGATGTCGTCCGCACCCGGTTTCAAGTTTATGATGGCAGAGGATCAAATCTCCCGACTTATAAGAATACGGCTAATGCAATCTTCACTATTACTCGGATGGAGGGCTTGAGAGGGCTATATGCAGGCTTCTATCCTGCAGTTCTCGGGTCATCTGTTTCTTGGGGTTTATATTTCTTTTTCTATGGTAGAGCCAAAGAAAGATATTCTGACAATGGAAAGAAGGACCTGAGTCCTAGTCTTCATCTTGCTTCTGCAGCGGAAGCAGGAGCTTTGGTTTGTTTTTGCACGAATCCAGTTTGGCTTGTGAAAACAAGAATGCAGCTTCAGAGTCCTCTTCATCAAGCTCAACCTTATTCTGGGCTATATGATGCCTTCAGAACCATTTTGAGAGAGGAAGGTTTTGCTGCTCTTTATAAAGGGATTGTTCCTGGCCTTATGCTTCAGGTTTCTCATGGTGCCATTCAATTTACAGTTTATGAAGAACTCCGTAAAGTTATTGCCAACTCGAGGTCTAAAGGGACCAGAGTGGATGCTCAAAGTTCTGGGGAATTACTGAATTCGGGTGATTATGCTGTTCTTGGAGGATCTTCTAAAATTGCTGCCATGCTTCTGACATACCCATTTCAAGTTATTCGAGCTCGATTGCAGCAAAGACCAGGGAATGATGGGATCCCAAGATACATGGATAGCTTCCACGTTCTTAAGGAAACTGCACGGTTTGAGGGCATTCGTGGGTTTTACAGGGGAATTACACCAAACCTTCTAAAGAATGTCCCAGCGGCTTCAATCACATTTATTGTTTGTCGGCGTTTACTTGGAGCTCGTCAGTTATCCATGGTATTGGTGGCAGAAGGAGCTGAGATGGATTCTGTGTTTACTAGCAGCCATTTGTTCAACACCATCACAAACAAGTCCAGAGGAGTTATTGTTTTGGGTTCTCTGGTGTATGTTCCTAAAGCTTCCCTAAGTTGTCTTCCACATTAA | 1968 | 45.22 | MRNLRILSPHFSRIRRTVAQNPCSDSPSTLNLNLLGLESFASSSSLNHRNYTTASPESRPPHSERVSAIVDEISGLTLLEVADLTEVLREKLDVKEMPVMAVMMPGMGFGGLQGAGKGGPGAKGGEEKKAEKTAFDVKLEAFDAASKIKIIKEVRTFTNLGLKEAKDLVEKAPTLLKKGVTKEEADTIIAKMKEWSILFVIPARSVSYDYIALATSSVSFVNYILIPFVSSTNRMLQKIPSFYGNFQVRAAVEDIFHLGWMRTWDCLVSFKTYGAFFIRTFHIFCLDLELYWWMDISWYLPLPDMWQWENATAGALAGFATVAAMHPLDVVRTRFQVYDGRGSNLPTYKNTANAIFTITRMEGLRGLYAGFYPAVLGSSVSWGLYFFFYGRAKERYSDNGKKDLSPSLHLASAAEAGALVCFCTNPVWLVKTRMQLQSPLHQAQPYSGLYDAFRTILREEGFAALYKGIVPGLMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELLNSGDYAVLGGSSKIAAMLLTYPFQVIRARLQQRPGNDGIPRYMDSFHVLKETARFEGIRGFYRGITPNLLKNVPAASITFIVCRRLLGARQLSMVLVAEGAEMDSVFTSSHLFNTITNKSRGVIVLGSLVYVPKASLSCLPH | 655 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 32340773 | 32350121 | + | ClG42_01g0205500.10 | Clacu01g2055 | 241439 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g2055 | 655 | SUPERFAMILY | ClpS-like | 131 | 195 | IPR014719 | - | |
| Clacu01g2055 | 655 | Gene3D | Single helix bin | 65 | 131 | IPR036235 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
| Clacu01g2055 | 655 | FunFam | Folate transporter 1, chloroplastic | 401 | 604 | - | - | |
| Clacu01g2055 | 655 | SUPERFAMILY | Ribosomal protein L7/12, oligomerisation (N-terminal) domain | 66 | 137 | IPR036235 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
| Clacu01g2055 | 655 | Gene3D | Mitochondrial carrier domain | 295 | 494 | IPR023395 | - | |
| Clacu01g2055 | 655 | SUPERFAMILY | Mitochondrial carrier | 307 | 595 | IPR023395 | - | |
| Clacu01g2055 | 655 | FunFam | folate transporter 1, chloroplastic isoform X1 | 299 | 400 | - | - | |
| Clacu01g2055 | 655 | CDD | Ribosomal_L7_L12 | 64 | 194 | IPR000206 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
| Clacu01g2055 | 655 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 404 | 493 | IPR018108 | - | |
| Clacu01g2055 | 655 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 516 | 602 | IPR018108 | - | |
| Clacu01g2055 | 655 | Pfam | Ribosomal protein L7/L12 dimerisation domain | 67 | 106 | IPR008932 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
| Clacu01g2055 | 655 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 307 | 602 | IPR044712 | GO:0006862(InterPro)|GO:0008517(PANTHER)|GO:0009941(PANTHER)|GO:0015230(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)|GO:1904947(PANTHER) | |
| Clacu01g2055 | 655 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 305 | 395 | IPR018108 | - | |
| Clacu01g2055 | 655 | Gene3D | - | 132 | 196 | IPR014719 | - | |
| Clacu01g2055 | 655 | Hamap | Large ribosomal subunit protein bL12 [rplL]. | 63 | 202 | IPR000206 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
| Clacu01g2055 | 655 | Pfam | Mitochondrial carrier protein | 516 | 595 | IPR018108 | - | |
| Clacu01g2055 | 655 | Pfam | Mitochondrial carrier protein | 308 | 398 | IPR018108 | - | |
| Clacu01g2055 | 655 | Pfam | Mitochondrial carrier protein | 404 | 496 | IPR018108 | - | |
| Clacu01g2055 | 655 | Pfam | Ribosomal protein L7/L12 C-terminal domain | 135 | 194 | IPR013823 | GO:0003735(InterPro)|GO:0006412(InterPro) | |
| Clacu01g2055 | 655 | FunFam | 50S ribosomal protein L7/L12 | 131 | 197 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g2055 | K15115 | - | - | csv:101204160 | 555.829 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g2055 | Clacu-Chr1:32340773 | Clacu09g0549 | Clacu-Chr9:4685985 | 2.30E-46 | dispersed | |
| Clacu01g2055 | Clacu-Chr1:32340773 | Clacu04g0824 | Clacu-Chr4:22619829 | 2.30E-17 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi4g1048 | . | . | . | . | . | . | . | Bma15g00985 | . | . | Cma03g00714 | . | . | . | . | Cpe19g00828 | Cpe10g00641 | Bhi03g00909 | . | . | . | . | . | . | Cla01g01945 | . | Cec04g1692 | . | Clacu01g2055 | Cmu01g1932 | . | . | Cone12ag0781 | . | . | Lsi01g00639 | . | . | Cme08g00891 | . | Blo06g00145 | . | . | Bpe10g00131 | . | . | . | . | Cmo03g00741 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Csa06g03287 | Chy02g00609 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0010733 | 0 | 3 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 32 |