Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2056 ATGAAAATTGTGATGAAGGGGTTGGTGAGGGATAGTGATAAATGGGTATTAATGGGTGAAATGGGAAAGAAGAAGCATATTGGAAACAAAGATGGGATTCCTAAAGGGAATTTGGGTTGGCCTTTCTTTGGTGAAACTCTTCAATTCATTTCGTCTGGCTATTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTATGGGAATGTGTTTAAAACCAACATTTTGGGGACACCCATTATAGTATCAACTGATTCAGAGGTGAATAAGGTTGTTTTACAAAACCATGGGAATATATTTATCCCAGCTTACCCAAAATCAATAACAGAATTACTTGGTACATTTTCAATTCTAAGAATGAATGGAAATGTTCAAAAAAGAGTTCATACAATAATTGGAGCCTTCCTAAGATCCCCTCAACTCAAAGCCCAAATCACACAAGATATTCAAAACACTGTTAAACTTCGACTTGCCAATTGGAATTCCTCTCAATTGGTTTATCTCCAAACTGAAACCAAACAGATCACATTTGAAGTATTGGTGAAGGTGTTGATGAGTGTGGGACCTGGCGAAGAATTGAAGATTTTGAAAAGGGAATTTGAAGAGTTTATCAAAGCTTTGATTTGTATACCCATTAAATTACCCGGAACTAGGCTATATAAATCTTTGAAGGCCAGAGAGAAGCTGTTGAAAATTGTGAGTAAGATTGTGGAAGATCGAAAGTCGAGGGTGGAGGAGAAGGTTGCACCGAGAGATGCGGTGGACGTGCTCTTACAGGATCACGATGAGATTCAAGGGCTACCGTTGGATTTCATCAGCAGTCACATCATAGAGTTGATGATTCCCGGCGAGGAGACGGTGCCGATGGCCATGACCCTCGCCGTCAAGTTTCTCAGTGATTGCCCCCGCGCTCTTGCCCAATTAATGGAAGAGAATATGAAACTGAAGAAGCAGAAGGATGGCTCTGGGGAGGAGTATACGTGGACAGATTACATGTCTCTACTATTTACTCAAAATGTGATCAGTGAAACATTAAGAATGGCCAATATCATCAATGGGGTTTGGAGAAAAGCTCAAAAAGATGTGCAAATCAAAGGCTATTTAATACCACAAGGATGGTGTGTCTTGGCGTCTTTTATTTCAGTTCATATGGACGAGAAGAACTACGCAAACCCACATCAGTTTGATCCATGGAGATGGGAGGAAAATTTGTCTGCAACAAACAACCACAACTTTACACCTTTTGGAGGGGGACAGAGGCTATGTCCTGGCATCGAACTCGCCAGGCTCGAAATCTCGATTTTCCTTCATCATCTCGTCACTACCTACAACTTCAAGTACCATTTGCTGAACAGGCGTATCAGAGATAGCATTAGGAACCCAGTTCCTGTGTCATTTGATGAAAGATGGCTTTCCTTAAATGCTGAACCCCATTTCTATTGCACATGCAAATTGGCTCAACTCTTTAAAGCTTTGCTGTAA 1488 41.13 MKIVMKGLVRDSDKWVLMGEMGKKKHIGNKDGIPKGNLGWPFFGETLQFISSGYSSRPVTFMDKRKSLYGNVFKTNILGTPIIVSTDSEVNKVVLQNHGNIFIPAYPKSITELLGTFSILRMNGNVQKRVHTIIGAFLRSPQLKAQITQDIQNTVKLRLANWNSSQLVYLQTETKQITFEVLVKVLMSVGPGEELKILKREFEEFIKALICIPIKLPGTRLYKSLKAREKLLKIVSKIVEDRKSRVEEKVAPRDAVDVLLQDHDEIQGLPLDFISSHIIELMIPGEETVPMAMTLAVKFLSDCPRALAQLMEENMKLKKQKDGSGEEYTWTDYMSLLFTQNVISETLRMANIINGVWRKAQKDVQIKGYLIPQGWCVLASFISVHMDEKNYANPHQFDPWRWEENLSATNNHNFTPFGGGQRLCPGIELARLEISIFLHHLVTTYNFKYHLLNRRIRDSIRNPVPVSFDERWLSLNAEPHFYCTCKLAQLFKALL 495
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 32352584 32359231 + ClG42_01g0205600.10 Clacu01g2056 241440
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2056 495 Pfam Cytochrome P450 34 449 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 Gene3D Cytochrome P450 23 463 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PANTHER CYTOCHROME P450 26 33 445 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Clacu01g2056 495 PRINTS P450 superfamily signature 341 352 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PRINTS P450 superfamily signature 139 152 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PRINTS P450 superfamily signature 415 424 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 SUPERFAMILY Cytochrome P450 33 450 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 417 426 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Clacu01g2056 495 FunFam 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1 23 455 - -
Clacu01g2056 495 PRINTS E-class P450 group I signature 273 290 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PRINTS E-class P450 group I signature 380 404 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PRINTS E-class P450 group I signature 414 424 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 PRINTS E-class P450 group I signature 424 447 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g2056 495 Coils Coil 307 327 - -
Clacu01g2056 495 CDD CYP90-like 65 448 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2056 Clacu-Chr1:32352584 Clacu07g1367 Clacu-Chr7:28484042 3.10E-115 dispersed
Clacu01g2056 Clacu-Chr1:32352584 Clacu09g0062 Clacu-Chr9:628159 5.70E-138 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2056 K12637 - csv:101203911 787.334