Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2063 ATGTCTGGCTTTTTCACTTTAGGAGGCGGCGGAGGAGGAGGAGGAGGAGGAAGAGAAGAGCACCAAGAAAACCAACAAAACAACCGCCCCAACGAAATTATTCCCCCGGATAGCAGCTTGTTTTGGTATAAGGGCAACGTGGAGGTATGGCAGCAGCAGCAGCAGCAGCATCATCATCATCATCATCATCATCATCATCATCAAGAACAAGCTCTCTTCCAAACCCAATCCCGGACTACTCCTTACTCCGCTCCTCTAGGCGTCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATAAGCTCAGGATCCGGTGGAGGTGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAGAAAGATTGCAGCCATATGCGGTGCAGAACTTGTTGCAAGAGCCGAGGATTCCATTGTGAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCCAAGCGTCGCGAGCGCCAAGACAAACTCGCTGCCTTACAAAGCCATCATCCACATCAACTTCATCTCCATGGCGACAATAATCCCAAACGCCACAGAGATTATAACCCCACTTCTTCCTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAATACTTCTGGGTTGGAAATTGGGAATTTCCCAGCCGAGTTAAACTCTCCGGCTGTTTTCCGTTGCGTTCGCGTCAGCTCTACCGACGATACTGACGACCAATACGCGTATCAAACGGCGGTAAATATCGGAGGACATGTTTTCAAAGGAATTCTATACGATCAAGGACCGGAAAATAATTATATTCCACCGGCTGAGACTTCATCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGTGCCGCTGATGCCACCGCAAGCGGTGGTTCCACCGCCGCATTACCCTTGATGGATCCTTCTTCTTTGTATTCAACGCCACTCAATAGCTTCATGGCGGGTACGCAATTCTTCCCACCACCAAGATCTTAA 1002 50.4 MSGFFTLGGGGGGGGGGREEHQENQQNNRPNEIIPPDSSLFWYKGNVEVWQQQQQQHHHHHHHHHHHQEQALFQTQSRTTPYSAPLGVRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFHCETHVKSTWVPAAKRRERQDKLAALQSHHPHQLHLHGDNNPKRHRDYNPTSSSSLACTLIPTNNNTSGLEIGNFPAELNSPAVFRCVRVSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPPAETSSGGGGSSSGVQPLNFIAGAADATASGGSTAALPLMDPSSLYSTPLNSFMAGTQFFPPPRS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32405716 32406939 - ClG42_01g0206300.10 Clacu01g2063 241447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2063 333 MobiDBLite consensus disorder prediction 72 105 - -
Clacu01g2063 333 Pfam Domain of unknown function (DUF702) 112 263 - -
Clacu01g2063 333 MobiDBLite consensus disorder prediction 1 38 - -
Clacu01g2063 333 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Clacu01g2063 333 MobiDBLite consensus disorder prediction 167 192 - -
Clacu01g2063 333 MobiDBLite consensus disorder prediction 167 186 - -
Clacu01g2063 333 NCBIfam LRP1 C-terminal domain 215 262 IPR006511 -
Clacu01g2063 333 MobiDBLite consensus disorder prediction 51 105 - -
Clacu01g2063 333 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 327 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2063 Clacu-Chr1:32405716 Clacu09g1418 Clacu-Chr9:19681662 5.00E-53 dispersed
Clacu01g2063 Clacu-Chr1:32405716 Clacu05g2030 Clacu-Chr5:29263007 1.90E-52 wgd
Clacu01g2063 Clacu-Chr1:32405716 Clacu07g0884 Clacu-Chr7:22016079 2.10E-51 wgd
Clacu01g2063 Clacu-Chr1:32405716 Clacu08g1620 Clacu-Chr8:25978250 1.90E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47088 PF05142 DUF702 2.40E-66 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2063 K27807 - csv:101207689 499.975