Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2068 ATGGAAGCTGCGTTGAAGATGGGTGTCACGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTAAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTCAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCACGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG 891 50.51 MEAALKMGVTKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLKQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32438204 32439094 + ClG42_01g0206800.10 Clacu01g2068 241452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2068 296 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2068 296 MobiDBLite consensus disorder prediction 191 219 - -
Clacu01g2068 296 MobiDBLite consensus disorder prediction 47 100 - -
Clacu01g2068 296 Gene3D - 209 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Clacu01g2068 296 MobiDBLite consensus disorder prediction 148 179 - -
Clacu01g2068 296 SMART GATA_3 212 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2068 296 MobiDBLite consensus disorder prediction 68 100 - -
Clacu01g2068 296 Coils Coil 44 67 - -
Clacu01g2068 296 PIRSF Txn_fac_GATA_plant 11 293 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Clacu01g2068 296 CDD ZnF_GATA 217 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2068 296 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2068 296 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2068 296 FunFam GATA transcription factor 207 291 - -
Clacu01g2068 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 211 274 - -
Clacu01g2068 296 PANTHER GATA TRANSCRIPTION FACTOR 43 284 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2068 Clacu-Chr1:32438204 Clacu11g0537 Clacu-Chr11:5044049 7.10E-35 dispersed
Clacu01g2068 Clacu-Chr1:32438204 Clacu07g0893 Clacu-Chr7:22385420 2.00E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47089 PF00320 GATA 1.20E-16 CL0167 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2068 - - - 0.0