Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2068 | ATGGAAGCTGCGTTGAAGATGGGTGTCACGAAGGAGATGACTTTCAAATCCAGCCCCAAACTTCATTTCGACGAATTTTGGTCCTCCAATCCGCAAAACGCTGCATCACCCTCTTCCGATTACATTTTTGTAGACCAGCTTCTCAACTTTTCGAACGAAGAAGAAGAAGAAGAAGAAGAGGCAGAGGGTGAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCTCTGCAACTTAAACAACACCACGACAGCGACCAGATTTCCAACCACAGCTCCACCAATTCCTCCGAAGATGACTTTTGGTCTATTTCTTCAAGAGATTTTGAAGACCTTGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCTGCCGCACCCCCGCCCTGCTCTGTTTTTTTGACACAGAAACCCATTAATTACCAGAAGGAAACAACCCACCACCGGAAAGCCCAGAATTTCGAATTCAATCTCAATACCCCATTTCCTTCAAAGCCCAGAAGCAAGCGAGCGAAAATCTCTGGCCGAGTCTGGTCCTTAACGAATTCAATTCCTTCCCCATCATTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATCCGGCTGAGGAGAGCTCCAGCAGGGTCCAGGCGCCACGGCGGTGCAGTCATTGCGGCGTTCAAAAAACCCCCCAATGGCGAGCCGGTCCACTTGGAGCAAAGAGTCTATGTAATGCGTGCGGTGTCCGGTTCAAATCGGGGCGGCTTTTTCCCGAATACAGACCGGCCTGTAGCCCGACGTTTTCGAGCGAGCTTCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCACTCCGGTCTGGAACCGGCCCTGTAG | 891 | 50.51 | MEAALKMGVTKEMTFKSSPKLHFDEFWSSNPQNAASPSSDYIFVDQLLNFSNEEEEEEEEAEGEEKNNHSSVSAPLQLKQHHDSDQISNHSSTNSSEDDFWSISSRDFEDLEWLSHLVADSTQEEYSAAPPPCSVFLTQKPINYQKETTHHRKAQNFEFNLNTPFPSKPRSKRAKISGRVWSLTNSIPSPSLYSPPAKKPKKNPAEESSSRVQAPRRCSHCGVQKTPQWRAGPLGAKSLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKETEKPHSGLEPAL | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32438204 | 32439094 | + | ClG42_01g0206800.10 | Clacu01g2068 | 241452 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2068 | 296 | ProSiteProfiles | GATA-type zinc finger domain profile. | 212 | 248 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2068 | 296 | MobiDBLite | consensus disorder prediction | 191 | 219 | - | - | |
Clacu01g2068 | 296 | MobiDBLite | consensus disorder prediction | 47 | 100 | - | - | |
Clacu01g2068 | 296 | Gene3D | - | 209 | 289 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Clacu01g2068 | 296 | MobiDBLite | consensus disorder prediction | 148 | 179 | - | - | |
Clacu01g2068 | 296 | SMART | GATA_3 | 212 | 266 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2068 | 296 | MobiDBLite | consensus disorder prediction | 68 | 100 | - | - | |
Clacu01g2068 | 296 | Coils | Coil | 44 | 67 | - | - | |
Clacu01g2068 | 296 | PIRSF | Txn_fac_GATA_plant | 11 | 293 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Clacu01g2068 | 296 | CDD | ZnF_GATA | 217 | 265 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2068 | 296 | Pfam | GATA zinc finger | 218 | 251 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2068 | 296 | ProSitePatterns | GATA-type zinc finger domain. | 218 | 243 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2068 | 296 | FunFam | GATA transcription factor | 207 | 291 | - | - | |
Clacu01g2068 | 296 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 211 | 274 | - | - | |
Clacu01g2068 | 296 | PANTHER | GATA TRANSCRIPTION FACTOR | 43 | 284 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2068 | Clacu-Chr1:32438204 | Clacu11g0537 | Clacu-Chr11:5044049 | 7.10E-35 | dispersed | |
Clacu01g2068 | Clacu-Chr1:32438204 | Clacu07g0893 | Clacu-Chr7:22385420 | 2.00E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47089 | PF00320 | GATA | 1.20E-16 | CL0167 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2068 | - | - | - | 0.0 |