Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2095 ATGATCAAGATTGGTTGGGGAGCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATCTGGTGTTGGATTTTGTGGTATCGTTTCATATTATAGTGGAGATTTCCCTCTCTCTTTTGGAAGGGATCAGAGGAATTCAACCCTGAGATTTACTCGCCGTTTTGCTCTGTTTAAATACCCTTTTGGGATCCTTATGGAACAGTGGAAGACGGGAGATTTCACTCAATCTATTGTACCAGCTGATTTAGTTCCTTCTTCGTCTCTTCAACCTCAGCCTGTCGCTGTGTCGTCCACTCGCCACCATAACAACCAGCTAACTGAATCCAGGTTAAGAGCAGATGCAGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAAAAGGCAGATCGTGAAAAGTTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCTAAAAATGACAAGGCTACCATCCTTACAGACACTATCCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAGGCTGACTATGAAACTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAGTCAGATATTGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCCACAATGGATCCTTCAGTTGTCATGGGGCCCCCATATTCCTACCCCGTTCCCGTTCCCGTTCCCCCTGGACCGATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAATCAGAATCCTGGTGCCATTCCCAACCCCTGTTCCACATTTGTCCCATATACTGCTGCTGCCAATCATCCGATCGATCAGCCCTCTGCCCATTATGCTTCCAATTCACATGTATCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCAGCACAGGCGTAGTAATGCGGAAAGATGCGACGAGTCCAACGATGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCTACACAGCAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAAAGTAAAGAAAAAAGTGTTACAGACTGCAGTTCTTCGAGTAGGTTTTCTTCATCCCAAGTTCTTCAAGATAGCTCCTCTAACAGTGTTGGCGACATCCCGAAACAGAACAACTGA 1200 44.83 MIKIGWGAGHPRGRGSWSARSGVGFCGIVSYYSGDFPLSFGRDQRNSTLRFTRRFALFKYPFGILMEQWKTGDFTQSIVPADLVPSSSLQPQPVAVSSTRHHNNQLTESRLRADAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYETLSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPIDQPSAHYASNSHVSSKQDSRSKSSDQHRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQSKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32658842 32661602 - ClG42_01g0209500.10 Clacu01g2095 241479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2095 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 173 IPR011598 GO:0046983(InterPro)
Clacu01g2095 399 MobiDBLite consensus disorder prediction 311 336 - -
Clacu01g2095 399 Gene3D - 122 225 IPR036638 GO:0046983(InterPro)
Clacu01g2095 399 SMART finulus 129 179 IPR011598 GO:0046983(InterPro)
Clacu01g2095 399 CDD bHLH_AtILR3_like 128 202 - -
Clacu01g2095 399 MobiDBLite consensus disorder prediction 341 358 - -
Clacu01g2095 399 MobiDBLite consensus disorder prediction 296 310 - -
Clacu01g2095 399 Coils Coil 163 218 - -
Clacu01g2095 399 MobiDBLite consensus disorder prediction 365 399 - -
Clacu01g2095 399 PANTHER TRANSCRIPTION FACTOR BHLH121 87 397 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Clacu01g2095 399 Pfam Helix-loop-helix DNA-binding domain 124 174 IPR011598 GO:0046983(InterPro)
Clacu01g2095 399 MobiDBLite consensus disorder prediction 293 399 - -
Clacu01g2095 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 193 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2095 Clacu-Chr1:32658842 Clacu02g1175 Clacu-Chr2:23659796 4.30E-51 dispersed
Clacu01g2095 Clacu-Chr1:32658842 Clacu05g1640 Clacu-Chr5:24311359 1.10E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47095 PF00010 HLH 8.30E-09 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2095 - - - 0.0