Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2100 ATGGAGATGGGGAGCAGTTGGAAATGGAGATGGAGAATGATTTTCATCTTCTCGCAGTTGATAATTACCACAATTTGTCAGCCACCCTTTGTCCAGCACAAGTGTTCCGACGACGTAGGCAACTATACAAACAGCAGCCCTTTCAAGAAAAATCTTGACGCCGTTCTCAACTCTATCTCCACCAATTCTCAGACCGACAAAGGTTTCTATGCGACCGCCGGCGAAGAACCAAACAGAGCCACCGCTATGGCGCTTTGTCGTGGTCCTGTTCCGTTGGAAAATTGTAGAGTTTGTGTGAAAAATTCAACCCAAAGGATTTCTCAAACTTGTCCGAACCAAAAGGAAGCTGCGGGATGGTACCCTGATTGCCAAATTATTTACTCAAACAAATCAATTCAAGGTGTGGTAGACAATTCTACCCCTACTTTTATGTTTTATAACACTATAAAAGCCCCAGACCCGAGTGTGTTTAACCAGGTACTAAGGAGCTTATTGGAAGAAATGCGAGTGCAGCTGGCTGAAACAGGGACTCCAACTCTAAAGTCTGCCAACGGAGTGAAAGAGGTTCCCAATAATGGTCCGAGTCCGAGTGATATCACACACATATATGGGCCGTTTGATTGTTTTTCTGATTTGTCTTTATCCGATTGTGATAGATGCCTCACCCTGCTTCAATCTTATCTTCCTGTTTGTTGTAACGCCAGCATTGGGGCTAGATTAATGGCAGATAGTTGCAAACTCAACTATGAGATCCCCCCCATCTATGCCTCCTTACTTCCAACCACCGTGCCACCACCACCCCCTTTCTATCTCTCTCTCCCTCCTACACAAACTCAAGGAGTTGACAACAATAATTCCGCTAGAAGAATTGTCATAATTGTTGTTTCTTCTACGCTTTCTTTTTCCATGCTCTTCTCCCGTATCCTCCTTATCTTTTTGAGAAAGAGGAAGCGAAACCAAAAGGTCAAGAGGATATTCGAAACAGCCGATCAATCCACAACCACAAATGAAATCCTAAGTATTGAGATGTTGCAATTTGTTTTCGAGACTATTGAGTTAGGAACAAATGAATTCTCAAGTGAAAATAAGATCGGAGAAGGTGGATTTGGAGCCGTTTACAAGGGTAAACTTCCTAATGGACGAGAAATAGCCGTGAAAAGACTTGCAAAAGATTCACAACAGGGAGATGTAGAATTTAGAAACGAAGTATTGTTGGTAGCCAAACTTCATCATAGAAATTTGGTTAGGCTACTTGGATTTTGCTTGCAAAAGAATGAAAGACTTCTCGTATATGAGTTTGTACAGAATGCAAGTCTTGACCACTTCATATTTGATTTTCATAATCGGATCCTTTTAGATTGGGAAACACGATACAAAATTATAAATGGTATTGCACGAGGACTTCTTTATCTTCATGAAGAATCTCGTCTCTTAATCATCCATCGTGATCTCAAAGCTAGCAATATTTTGTTGGATGAGAAGATGAATCCAAAAATTGCAGATTTTGGTACAGCAAGAATGTTTGAAGTAGATGGAACTCATGGGAATACAAATAGAATTGTGGGAACTTATGGATATATGGCTCCAGAGTATGCATTGGATGGACAATTTTCAGTAAAATCGGATGTATTTAGCTTTGGTGTTTTGGTTCTTGAAATTATAAGTGGTCAAAAAAATATTTGTTTTCGCAATGGAAAAAAAGTGGAAGATCTCTCCAACTTTGCATGGAAAAATTGGAGGGCAGGAACACCAATGAATGTGATAGATCCAAAATTAAAAGATGGTTCTACTTTTGAAATGGTAAGATGCATACATATTGGACTATTGTGTGTTCAAGAAAATGCAGCAGATCGACCAACAATGGCTTCATTAATTTTGATGCTTGGTAGTTTCTCTCTCACTCTTCCTATACCATCCCAACCAGCATTCTTTATGCACAGTAATATTGAAGAATCTAACACTGTGGCAAAACCAAATCCTCCATTGGGAATGGCTCAATCTTTTCATTTCAAAAGTACACCTCTTGAGCCATCACTGAATGAAATTTCAATCACTGAGCTTCGTCCTCATTAG 2073 39.89 MEMGSSWKWRWRMIFIFSQLIITTICQPPFVQHKCSDDVGNYTNSSPFKKNLDAVLNSISTNSQTDKGFYATAGEEPNRATAMALCRGPVPLENCRVCVKNSTQRISQTCPNQKEAAGWYPDCQIIYSNKSIQGVVDNSTPTFMFYNTIKAPDPSVFNQVLRSLLEEMRVQLAETGTPTLKSANGVKEVPNNGPSPSDITHIYGPFDCFSDLSLSDCDRCLTLLQSYLPVCCNASIGARLMADSCKLNYEIPPIYASLLPTTVPPPPPFYLSLPPTQTQGVDNNNSARRIVIIVVSSTLSFSMLFSRILLIFLRKRKRNQKVKRIFETADQSTTTNEILSIEMLQFVFETIELGTNEFSSENKIGEGGFGAVYKGKLPNGREIAVKRLAKDSQQGDVEFRNEVLLVAKLHHRNLVRLLGFCLQKNERLLVYEFVQNASLDHFIFDFHNRILLDWETRYKIINGIARGLLYLHEESRLLIIHRDLKASNILLDEKMNPKIADFGTARMFEVDGTHGNTNRIVGTYGYMAPEYALDGQFSVKSDVFSFGVLVLEIISGQKNICFRNGKKVEDLSNFAWKNWRAGTPMNVIDPKLKDGSTFEMVRCIHIGLLCVQENAADRPTMASLILMLGSFSLTLPIPSQPAFFMHSNIEESNTVAKPNPPLGMAQSFHFKSTPLEPSLNEISITELRPH 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32702438 32706211 - ClG42_01g0210000.10 Clacu01g2100 241484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2100 690 SMART serkin_6 358 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2100 690 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 81 644 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2100 690 CDD STKc_IRAK 364 628 - -
Clacu01g2100 690 Pfam Salt stress response/antifungal 34 130 IPR002902 -
Clacu01g2100 690 Pfam Salt stress response/antifungal 152 250 IPR002902 -
Clacu01g2100 690 SUPERFAMILY Protein kinase-like (PK-like) 346 659 IPR011009 -
Clacu01g2100 690 FunFam Cysteine-rich receptor-like protein kinase 28 434 636 - -
Clacu01g2100 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2100 690 Gene3D - 28 131 IPR038408 -
Clacu01g2100 690 Gene3D - 139 253 IPR038408 -
Clacu01g2100 690 ProSiteProfiles Gnk2-homologous domain profile. 139 254 IPR002902 -
Clacu01g2100 690 FunFam Cysteine-rich receptor-like protein kinase 10 316 433 - -
Clacu01g2100 690 Gene3D Phosphorylase Kinase; domain 1 318 433 - -
Clacu01g2100 690 ProSiteProfiles Gnk2-homologous domain profile. 30 132 IPR002902 -
Clacu01g2100 690 ProSiteProfiles Protein kinase domain profile. 358 643 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2100 690 Gene3D Transferase(Phosphotransferase) domain 1 434 634 - -
Clacu01g2100 690 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524(InterPro)
Clacu01g2100 690 Pfam Protein kinase domain 359 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2100 Clacu-Chr1:32702438 Clacu01g2303 Clacu-Chr1:33951181 6.20E-207 dispersed
Clacu01g2100 Clacu-Chr1:32702438 Clacu01g2304 Clacu-Chr1:33956294 2.00E-205 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73272 PF00069 Pkinase 1.40E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2100 - - - 0.0