Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2103 ATGGAATTACTTGTTTTTGTTGGCATTGCAATTGGGCCGTGCCTGAGCCAGATCACAGATTCACAATTTGAGGCATCCCCGATCGCAGTGCGGTGGCGGGAAGATATGCGAATGATGGATAGCAACAAACCCATCCTCAAGGCTTCATCTCTGAGATGGAAAATTCTCCGTCAAGCGCTTATTCCTCGTTCTTCTTCCCGCAATGAGGATCAGTCTGAAATGGACACCAAGCGTATTTCTAGGAGGACGACGAACGGCTTCAATTTGATTCCCTCATTTATATCGGACGATATTGGAGACGAAGGCGCGGGCGGTTTTTCTGTATCTCATTGCTCCGATCACCGTCGAGATCGTCGCGTGTGCTATACCTTGCCTATCGATGGAGCGTCCAAACTTTTCCTCAAGCAAAGAATGGACGATGTTGCTGACCTTGATGACTTCAAGATCTGTAATAAATATGATATTGACAACACCGGGCTTGTTTGTCATTGGCCATCAGAAGATGTTCTTGCTTACTTCTGTTTGTTGCATTTGGACCTATTTAGGTGTAAGAGAGTTATAGAGCTTGGATCTGGCTATGGCTTGGCTGGATTAGTTGTTGCTGCAAGTACAGAAGCATCAGAAGTTGTTATCACAGATGGAAATCCTCAAGTAGTTGAATATATTCAGCATAATATAGCAATGAACTCTAAAGCATTTGGTGGCACCAGAGTAGATTCTTTGACATTGCATTGGAATCAGGAAAACGTCTCAAATATTTCTGGCAGTTTTGATCTCATTATTGCCAGTGACTGCACTTTTTTTAAAGAATACCATCAAGGTCTTGCTAGAACGGTCATGTCCTTGTTGAAGAAAGCAGATTCATCAGAAGCTATATTTTTTAGCCCCAAAAGAGGTGACTCACTCGTGAAGTTTCTAGAGGAAATCAAAGCCAGTGGCTTGCATTTCAGTGTGACAGAGGAGTATAATGCCGAAGTTTGGAAACTACATGAGAAATTCTCTAATGGTGATGACTCCTGGCCTGGATATGAAAAGGATCATTGCTATCCATTATTGCCCACCTTGACTTATAGACAAAGCCTTCACAATTGGTACTTTCCATGCCTTAGAGTAAACAAGGTCTTCTGTTCTGTCAAAAGGAAGATGGTGATGAAGAAGCATGGCATCAGCAGGGCCCTTCCCATTTCTGTAAGTCCTTTTGTCCTATCACATTTGTTGGAAGATCTCAAACTTGGTCAACATATGAAGACTGCCCCTCGAGAAATGTCTATGGCTCAGGAAGAAAGGGAATTACTTTGTCAGGTGTTAGGTTCAACAATAATTAAGCAGCTTGTGATGTCTATGGCTGTCTCTTGCCCATCACTCCAAGCATATATGGCCACACAGTATTTGCTTCCGGTAGCCTACCCCATGGAGTTGTTCCGACAACCATGTCCTTTTATGAAGTTTTTTGGCTCCGGCCTGACCCCGTTGGATCTTGTGGCCTACCAATCTATCAAATGGTTTCTTTTAGTCGGTGCCATAGCTACTCCTGTGATGGATGCCCTTAAGCTTCTGGTCCTACAGCCAAAGGCGTTGTCCTTAAAGGTTGTCTTGTCCAATCCTTTAGGAGATGCTTAA 1620 43.52 MELLVFVGIAIGPCLSQITDSQFEASPIAVRWREDMRMMDSNKPILKASSLRWKILRQALIPRSSSRNEDQSEMDTKRISRRTTNGFNLIPSFISDDIGDEGAGGFSVSHCSDHRRDRRVCYTLPIDGASKLFLKQRMDDVADLDDFKICNKYDIDNTGLVCHWPSEDVLAYFCLLHLDLFRCKRVIELGSGYGLAGLVVAASTEASEVVITDGNPQVVEYIQHNIAMNSKAFGGTRVDSLTLHWNQENVSNISGSFDLIIASDCTFFKEYHQGLARTVMSLLKKADSSEAIFFSPKRGDSLVKFLEEIKASGLHFSVTEEYNAEVWKLHEKFSNGDDSWPGYEKDHCYPLLPTLTYRQSLHNWYFPCLRVNKVFCSVKRKMVMKKHGISRALPISVSPFVLSHLLEDLKLGQHMKTAPREMSMAQEERELLCQVLGSTIIKQLVMSMAVSCPSLQAYMATQYLLPVAYPMELFRQPCPFMKFFGSGLTPLDLVAYQSIKWFLLVGAIATPVMDALKLLVLQPKALSLKVVLSNPLGDA 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32726301 32730897 - ClG42_01g0210300.10 Clacu01g2103 241487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2103 539 PANTHER CALMODULIN-LYSINE N-METHYLTRANSFERASE 43 359 IPR025800 GO:0005737(InterPro)|GO:0018025(PANTHER)|GO:0018025(InterPro)
Clacu01g2103 539 Pfam Lysine methyltransferase 177 310 IPR019410 -
Clacu01g2103 539 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 155 285 IPR029063 -
Clacu01g2103 539 CDD AdoMet_MTases 185 285 - -
Clacu01g2103 539 Gene3D Vaccinia Virus protein VP39 79 359 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2103 K18826 - - csv:101222055 605.905
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1124 . . . Bda10g00188 . . . Bma15g00937 . . Cma03g00679 . . . . . Cpe10g00670 . . . . . . . Cla01g01987 Cam01g2082 Cec04g1741 Cco04g1807 Clacu01g2103 Cmu01g1979 Cre04g1655 Cone8ag0855 . . . . . . Cme08g00940 . Blo06g00297 . . Bpe10g00160 . . . . Cmo03g00704 . . . . . . . . . . . . . . . . . . . . . . Csa06g03337 Chy02g00562 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005598 0 9 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 4 1 1 38