Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2109 ATGCTTCGGACGAGACTCGGTCGGCTCATATTGGTTCACACCCCGCCACCGGCGGTCGGGTTCCGGTTCGTTAAATCATCCGTTTCTATTTCAATGGCGCCTCCCAAAGTCGATGCTGCGTACCTCAAGGAAATCGAGAAGGCCCGTAGAGACCTTCGCGCTCTAATCTTCAAGGAGAAATGCGCTCCTATTATGCTCCGATTAGCGTGGCATGATGCTGGTACTTACGACGCTGAAACGAAAACCGGCGGTCCTGATGGCTCCATCAGATTCATGGATGAATTGAACCATACTGCAAACAAGGGACTCAAAATCGCAGTTGATTTCTGTGAAACTGTGAAGGCCAGACATCCAAAAATCACATATGCAGATCTGTACCAGCTTGCTGGAGTTGTTGCTGTGGAGATAACTGGCGGGCCATCCATTGACTTTGTCCCCGGAAGAAAGGACGCAAATGTCGTGCCAGAAGAAGGCCGCCTGCCAGATGCCAACCAAGGTGCTTCCCATTTAAGAGATGTCTTTTACAGGATGGGACTGACTGACAAGGATATCGTGGCATTATCTGGGGGACACACATTGGGAAGAGCACACAAGGATAGATCAAATTTTGAAGGCCCATGGACAAAGGACCCTCTGAAGTTTGATAACTCCTACTTCGTGGAATTGCTGAAAAATGACTCTCGATCCAAGGAACAACTATTGAAGCTTCCTACAGACAAGGCCTTGGTTGAGGATCCTCGGTTTTCCCAATATGTAAAGGCATACGCAAAGGATGAAGACAAGTTTTTCGAGGATTATGCAGCATCTCACAAGAAACTGTCTGAGCTTGGCTTCACTAAACCTTCAACGGGTCTCAAGAGCAGCGCCTCCTCCTCATGGGCAAATAAAATTCTTGTAGCCGCAATCGTAGCTGTTGTGGCGATACTGAGTTACAAAAGAGCCATGTCGCCTGAGTGGGATGCCTTTCTTCTTACTCTCTTTTGA 984 48.17 MLRTRLGRLILVHTPPPAVGFRFVKSSVSISMAPPKVDAAYLKEIEKARRDLRALIFKEKCAPIMLRLAWHDAGTYDAETKTGGPDGSIRFMDELNHTANKGLKIAVDFCETVKARHPKITYADLYQLAGVVAVEITGGPSIDFVPGRKDANVVPEEGRLPDANQGASHLRDVFYRMGLTDKDIVALSGGHTLGRAHKDRSNFEGPWTKDPLKFDNSYFVELLKNDSRSKEQLLKLPTDKALVEDPRFSQYVKAYAKDEDKFFEDYAASHKKLSELGFTKPSTGLKSSASSSWANKILVAAIVAVVAILSYKRAMSPEWDAFLLTLF 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32781139 32785613 - ClG42_01g0210900.10 Clacu01g2109 241493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2109 327 FunFam Cytosolic ascorbate peroxidase 48 165 - -
Clacu01g2109 327 Gene3D Peroxidase, domain 2 161 270 - -
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 119 137 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 177 198 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 80 90 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 41 61 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 159 176 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 199 223 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 254 278 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 94 118 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 62 77 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Plant ascorbate peroxidase signature 138 150 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 38 286 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Clacu01g2109 327 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Clacu01g2109 327 SUPERFAMILY Heme-dependent peroxidases 36 281 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 CDD ascorbate_peroxidase 35 281 - -
Clacu01g2109 327 Gene3D - 48 277 - -
Clacu01g2109 327 FunFam L-ascorbate peroxidase, cytosolic 161 270 - -
Clacu01g2109 327 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Haem peroxidase superfamily signature 207 222 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 ProSiteProfiles Plant heme peroxidase family profile. 120 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu01g2109 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Clacu01g2109 327 Pfam Peroxidase 49 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2109 K00434 - - csv:101220337 480.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2109 Clacu-Chr1:32781139 Clacu03g0207 Clacu-Chr3:2290928 3.00E-87 dispersed
Clacu02g0443 Clacu-Chr2:3995253 Clacu01g2109 Clacu-Chr1:32781139 1.60E-111 transposed
Clacu02g2132 Clacu-Chr2:34461034 Clacu01g2109 Clacu-Chr1:32781139 3.70E-83 transposed
Clacu08g0728 Clacu-Chr8:17135396 Clacu01g2109 Clacu-Chr1:32781139 4.40E-60 transposed
Clacu08g1491 Clacu-Chr8:24877591 Clacu01g2109 Clacu-Chr1:32781139 2.60E-33 transposed
Clacu11g1610 Clacu-Chr11:27258738 Clacu01g2109 Clacu-Chr1:32781139 5.50E-10 transposed
Clacu01g2109 Clacu-Chr1:32781139 Clacu08g1576 Clacu-Chr8:25585299 1.80E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1143 . . . Bda10g00192 . . . . . . . . . . Sed14g1205 . Cpe10g00676 Bhi03g00841 Tan03g2100 Cmetu04g0811 . Hepe04g1608 . . Cla01g01992 Cam01g2091 Cec04g1748 Cco04g1813 Clacu01g2109 Cmu01g1985 Cre04g1662 . . . . . . . Cme08g00948 . . . . Bpe10g00164 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03346 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63