Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2125 ATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGGTGCCGTCCTCGGACAGTATCGTACACAGTGGTTCAGATTCAGCAGGCCGTCATGAAGGCTTGCTATGGTACAAGGATATTGGACAGCACATGAATGGGGAATTTTCAATGGCTGTAGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCATTGAGCTTGCTCGACTCCGGGCCATATGGTACCTTTATTGGTGTCTATGATGGCCATGGTGGGCCTGAAGCATCAAATTACGTATATGAGAATCTTTTCCAGCATCTAAAAAGGTTCGCCTCAGAACAACAATCAATGTCATCTGATGTGATCAAGAAAGCATTTCAAGCTACAGAAGAAGGATTCATTTCTTTAGTGACTAAACAGTGGCAAATGAAGCCTCAAATTGCAGCTGTTGGTTCATGTTGCCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTGCTCGGAAGGCTCATGCGATCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTCAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCATCCAGATGACTCACATATAGTAGTTTTGAAGCATAATGTGTGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCATATCTAAAGAGGGCAGAATTCAACAGGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCGTTCACTCGACCAATATTGAGCTGTGAACCATCAATTTCAGTGTATGAGCTTCAACCACATGATCAATTCATCATATTCGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAACAGGCTGTCGATATTATTCAAAATCACCCGCATAATGGAAGTGCTAAGAGGCTGGTAAAAGCTGCTATGCTAGAAGCAGCTAAGAAACGAGAAATGCGATATTCAGATTTGAAGGATATTGATCGTGGAGTACGCCGCCACTTTCATGATGACATCACTGTCATAGTTGTATTTCTTGACTCGAATCTTGTAAGTAGAGCGAGCTCGGTCCAAGGCCCAACCACGTCTTTGAGAGGGTGTGGCGTTATCTTACCTACAAAATCTCTAGCTCGTTGTGCCACACCTACAGAACTTAACACAGGCTGA 1194 45.23 MLSSLMNFLRACWVPSSDSIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLDSGPYGTFIGVYDGHGGPEASNYVYENLFQHLKRFASEQQSMSSDVIKKAFQATEEGFISLVTKQWQMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLMRSTEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNREPLYAKFRLREPFTRPILSCEPSISVYELQPHDQFIIFASDGLWEHISNQQAVDIIQNHPHNGSAKRLVKAAMLEAAKKREMRYSDLKDIDRGVRRHFHDDITVIVVFLDSNLVSRASSVQGPTTSLRGCGVILPTKSLARCATPTELNTG 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32897366 32899316 + ClG42_01g0212500.10 Clacu01g2125 241509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2125 397 SMART PP2C_4 41 353 IPR001932 -
Clacu01g2125 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Clacu01g2125 397 FunFam Phosphatase 2C family protein 36 365 - -
Clacu01g2125 397 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Clacu01g2125 397 Pfam Protein phosphatase 2C 80 322 IPR001932 -
Clacu01g2125 397 CDD PP2Cc 48 355 IPR001932 -
Clacu01g2125 397 PANTHER PROTEIN PHOSPHATASE 41 354 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu01g2125 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Clacu01g2125 397 Gene3D - 37 366 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2125 Clacu-Chr1:32897366 Clacu02g0419 Clacu-Chr2:3772477 1.60E-162 dispersed
Clacu06g0432 Clacu-Chr6:5126609 Clacu01g2125 Clacu-Chr1:32897366 7.30E-117 transposed
Clacu10g1738 Clacu-Chr10:30914234 Clacu01g2125 Clacu-Chr1:32897366 4.00E-118 transposed
Clacu01g2125 Clacu-Chr1:32897366 Clacu10g0045 Clacu-Chr10:851231 1.00E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2125 K01102 - csv:101219696 755.747