Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2129 ATGTCGGTTCCCTCGAAGAAGAAGACGTTTATTTCAATTGAAACGTTGAAAGAAGAGCGATCTACCCGATACTTTTCTTCCGATTCAAACGTTGATCATTTGAAAGAAACCTCCATTTTTGGATGGGAAGGTTCGAGCTGTAAACAGGATGTCAAGATCTTTTACACACAAAGTACAGCAGCTACTGAAAATGGCCATTTCTTGATACGAAGACCCACTAATCTCAGTGCCCCACGTTGTGCTGCCTTGAAAAACAATCAATCAACAAAGTCCATCTTGTTGAGTTTCTGCTCACATGGAGGATTCCGAATGCCCCTTGTTTTTGCTTTAGTTTTCATGGCGGAAAGTTTAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCGAGGCTGCCGAGTTGCCTAACATGGACATTGTATCTGAGCGTCTTCGTCGTTGCTTCACAGCCTGTGGTACTCTCGATTACTCTGCCATTAAATCCGTCGCAACCAACTCCCGTTCTGCCGGCGGTGAGGGGAAAGTCCACCGCGGCCGTGGAAAAATTATCACGAGCGATCCATATGTTACCGTCCGGGTCCCTCAAGCCACCGTCGCTCGGACCCGCGTCATAAAGAATTCCCAGAATCCCTATTGGAACGAGCATTTCATTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAAGTTATGGGGACGGTTAAAATCTCTGCTCAGAAAATTGCCTCCGGTGAGACAATTAGTGGGTGGTATCCGGTGCTTGGTTCAAATGGCAAGCCACCGAAGCTTGGCACTTCACTCAGAATCGAAATGAAGTTCACCTCAGTTGAAGAAAACCCGCTATACCGACACGGCATTGCTGGAGATCCCGAGCATAAGGGTGTGCGACACACTTATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAAGAGAAATGTTGGGAGGATATCTGCTATGCTATATCAGAGGCTCATCATATGATTTATATTGTTGGTTGGTCGGTTTTTCATAAGGTGAAGCTGGTTAGAGAGCCAACCAGGCCGCTGCCAAGAGGTGGAGATTTGACTCTTGGTGACCTCCTCAAATACAAATCAGAAGAGGGTGTCCGAGTTTTGATGCTAGTTTGGGATGATAAGACTTCTCACGATAAGTTCTTCATCAACACGGAAGGATTGATGCAGACACATGACGAGGAAACCAGAAAATTTTTCAAGCATTCTTCTGTGATCTGTGTGCTCTCACCTCGCTATCCAAGCGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTTGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTAGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCTTTTCTTGGAGGTCTTGATCTCTGTGATGGTCGATACGATACACCTGAGCATCGATTGTTCCATGACCTTGACACAGTATTTAAGGATGATTTTCATAACCCTACAATTCCTCCTGGAGCCACAGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCTGCTTATGACTTGCTTATAAACTTTGAGCAACGGTGGAACAGAGCTACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTACTCATTGGCACGATGCTTTAATAAAGATAGAGCGTATTTCATGGATACTAAGCCCTCACGTAACTTTCTTAGATGATGGTTCATTAAAAGTTCCAGAGGATGACCCTAAAGTATATGTTTCGAAGGAAGAAGATCCTGAAAATTGGCATGTTCAGATTTTTCGATCCATTGACTCTGGTTCAGTTAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCGCAGAACCTTGTTTGTGCAAAAAACCTGGCTATTGAGAAAAGCATTGAAATGGCATATATCCAAGCTATCAGATCGGCACAACATTTCATTTATATTGAAAATCAGTATTTTATTGGATCATCATACGGATGGCCAGGATATAAAAATGCCGGAGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCGAAGGAAAGATTTGTTGTATATATTGTCATACCAATGTGGCCTGAGGGAGATCCGAATAGTGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGCACCCTCTGGACTTTCTAAATTTTTACTGCCTTGGAAAACGGGAAGAACTTCCTGAGAATGGGCCAACCACTGATGATGCAACGGCATGTAATTCACTAAAACATCGACGGTTTATGATTTACGTGCATGCCAAGGGGATGATAGTAGATGATGAATATGTAATTATTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGAACAAAAGACACCGAGATAGCCACAGGCGCATATCAGCCCCATCACACGTGGGCAAAAAAAAAGAAACACCCACATGGTCAGATTTACGGATACAGAATGTCGTTGTGGAGCGAGCATCTTGGAATGCTCAATCCATGTTTCGAGGAGCCAGAAACTTTGGAATGTGTAAGAAAAGTCAATGGGATTGCTGAGGATAACTGGAACAGATTCACAGCCGATGAATTCACGACATTGCAGGGTCACCTTCTCAGGTATCCGGTGCTTGTAGATGGTGACGGAAAAGTCAGCCCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACCACATAG 2910 44.4 MSVPSKKKTFISIETLKEERSTRYFSSDSNVDHLKETSIFGWEGSSCKQDVKIFYTQSTAATENGHFLIRRPTNLSAPRCAALKNNQSTKSILLSFCSHGGFRMPLVFALVFMAESLEEVYLHGDLDLKIFEAAELPNMDIVSERLRRCFTACGTLDYSAIKSVATNSRSAGGEGKVHRGRGKIITSDPYVTVRVPQATVARTRVIKNSQNPYWNEHFIIPLAQKMAELEFQVKDDDVFGAEVMGTVKISAQKIASGETISGWYPVLGSNGKPPKLGTSLRIEMKFTSVEENPLYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVFHKVKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLMLVWDDKTSHDKFFINTEGLMQTHDEETRKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHDLDTVFKDDFHNPTIPPGATAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCRRITHWHDALIKIERISWILSPHVTFLDDGSLKVPEDDPKVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLHPLDFLNFYCLGKREELPENGPTTDDATACNSLKHRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKKKHPHGQIYGYRMSLWSEHLGMLNPCFEEPETLECVRKVNGIAEDNWNRFTADEFTTLQGHLLRYPVLVDGDGKVSPLPGHENFPDVGGKIIGSHSTAIPDVVTT 969
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32931600 32939277 + ClG42_01g0212900.10 Clacu01g2129 241513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2129 969 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 814 841 IPR001736 GO:0003824(InterPro)
Clacu01g2129 969 SMART C2_3c 125 263 IPR000008 -
Clacu01g2129 969 PANTHER PHOSPHOLIPASE D 121 956 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Clacu01g2129 969 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 122 287 IPR035892 -
Clacu01g2129 969 CDD C2_plant_PLD 120 287 - -
Clacu01g2129 969 Gene3D C2 domain 123 295 IPR035892 -
Clacu01g2129 969 SMART pld_4 814 841 IPR001736 GO:0003824(InterPro)
Clacu01g2129 969 SMART pld_4 469 504 IPR001736 GO:0003824(InterPro)
Clacu01g2129 969 SUPERFAMILY Phospholipase D/nuclease 665 899 - -
Clacu01g2129 969 Gene3D Endonuclease Chain A 638 864 - -
Clacu01g2129 969 Pfam C2 domain 186 266 IPR000008 -
Clacu01g2129 969 Gene3D Endonuclease Chain A 339 577 - -
Clacu01g2129 969 SUPERFAMILY Phospholipase D/nuclease 309 573 - -
Clacu01g2129 969 FunFam Phospholipase D delta 341 585 - -
Clacu01g2129 969 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 469 504 IPR001736 GO:0003824(InterPro)
Clacu01g2129 969 Pfam Phospholipase D C terminal 890 958 IPR024632 -
Clacu01g2129 969 ProSiteProfiles C2 domain profile. 152 264 IPR000008 -
Clacu01g2129 969 Pfam Phospholipase D Active site motif 816 841 IPR001736 GO:0003824(InterPro)
Clacu01g2129 969 PIRSF PLD_plant 111 969 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2129 Clacu-Chr1:32931600 Clacu06g0019 Clacu-Chr6:419311 1.90E-262 dispersed
Clacu01g2129 Clacu-Chr1:32931600 Clacu08g1564 Clacu-Chr8:25477023 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2129 K01115 - csv:101217251 1679.84