Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2155 ATGGCGTTTTCCGATGAGAACAATCCCAGCTTGATCAAACCCACTTCATTTCTTCCAGGAGGAGGGTTGGAGAAGAGTGGGAGAGCATTTGGGCAGGAGATTAATAGAGCTAATAACAATCGGAGAGCTCTTAATGCCATTAATCAGAATTCTGTGGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGTCCTATCAGGAAAGCAAGAGATTTGCGAGAAGAAGCAGGTTGATCCATTTCATAGACCCATTACAAGGAAATTTGCTGCTCAAATTGCGAGTAGTCAACAGCTTCATCATCCTCAGGAAAATAATAAGCCTAACTCATTTCTTACAAACTCAAATGCGTTTGGACATTCCATATTTGTAGACGACGATTGCAAAACAGTAGAAAATGATCATCCAGTTCCAATGTTCTTGGAGAAATCAGAACCATCATTGCCTCAGGAAGCAAGCCAGATGGAGGAGGTTGAAATGGAGGATATAGCAGAAGACGAAGACCCAGTAATCGACATCGACAGTGTCGATTCCGAGAACCCGCTTGCCGTTGTTGAGTACGTGGACGATCTCTACGCACACTATAGAAAAATCGAGAATTCAAGCTGTGTTCCCCCAAATTACATGACCAAACAAACTGACATTAATGAGAAGATGAGAGCTATACTAATTGACTGGCTTATAGAGGTGCATGACAAGTTTGATCTCATGGGAGAAACTTTGTTTCTCACTGTGAATCTCATAGACAGATTTTTGGCACAAAAAACAGTAGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTTTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGCGATGCTCAACTGTTTGCAGTTTAACATGTCAGTTCCCACACCCTTTGTTTTCCTTCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTTGAGCTAATGGCATTCTTCTTGATCGAACTCTCGCTCGTCGAGTATGAAATGCTGAGGTTCCCACCCTCTCTCCTAGCAGCAGCGGCAATTTACACAGCTCAATGTACTCTCACCAGAGTCGATGGTTGCTGGAGCCGGACCTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCGAGACTAATGGTGGGTTTCCATCAAAAGGCGGCGACGGGGAAGCTTACCGGAGTTCATAGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1335 42.85 MAFSDENNPSLIKPTSFLPGGGLEKSGRAFGQEINRANNNRRALNAINQNSVVNQAYPCVVNKRVLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHHPQENNKPNSFLTNSNAFGHSIFVDDDCKTVENDHPVPMFLEKSEPSLPQEASQMEEVEMEDIAEDEDPVIDIDSVDSENPLAVVEYVDDLYAHYRKIENSSCVPPNYMTKQTDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLAQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETAMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYEMLRFPPSLLAAAAIYTAQCTLTRVDGCWSRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33060703 33062968 - ClG42_01g0215500.10 Clacu01g2155 241539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2155 444 CDD CYCLIN_AtCycB-like_rpt2 318 435 - -
Clacu01g2155 444 PIRSF Cyclin_A_B_D_E 21 444 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Clacu01g2155 444 PANTHER CYCLINS 168 423 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Clacu01g2155 444 ProSitePatterns Cyclins signature. 220 251 IPR048258 -
Clacu01g2155 444 FunFam G2/mitotic-specific cyclin-1 312 431 - -
Clacu01g2155 444 FunFam G2/mitotic-specific cyclin 204 311 - -
Clacu01g2155 444 Gene3D - 204 316 - -
Clacu01g2155 444 SMART cyclin_7 322 405 IPR013763 -
Clacu01g2155 444 SMART cyclin_7 225 309 IPR013763 -
Clacu01g2155 444 Pfam Cyclin, C-terminal domain 318 435 IPR004367 -
Clacu01g2155 444 Gene3D - 190 431 - -
Clacu01g2155 444 CDD CYCLIN_AtCycB-like_rpt1 167 313 - -
Clacu01g2155 444 SUPERFAMILY Cyclin-like 179 315 IPR036915 -
Clacu01g2155 444 SMART Cyclin_C_2 318 436 IPR004367 -
Clacu01g2155 444 MobiDBLite consensus disorder prediction 1 23 - -
Clacu01g2155 444 Pfam Cyclin, N-terminal domain 190 316 IPR006671 -
Clacu01g2155 444 SUPERFAMILY Cyclin-like 317 436 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2155 Clacu-Chr1:33060703 Clacu11g2051 Clacu-Chr11:31446050 3.60E-131 dispersed
Clacu01g2155 Clacu-Chr1:33060703 Clacu01g2159 Clacu-Chr1:33084243 8.40E-48 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2155 K21777 - csv:101216622 834.328