Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2165 ATGATAGGCAAAGTTGGAAAAATTGCTGTAGAAGCTGCTGTTGAGGATGTAAATTCTGATCCATCCATTCTGGGGGGGACAAAACTGAAGCTTAGTTTACATGATACCAATTATAGTGGATTTTTGGGCATCATTGAATCCTTGCGTTTCATGGAGACTAAGACCATGGCCATAATTGGCCCTCAAAACTCTGTTACTGCTCATGTTATATCTCATATTGCAAATGAGGTCCAAGTTCCTCTCTTGTCATTTTCAGCAACAGATCCCACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTACCAATGGAAAGAGGTGATTGCCATATTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAATGAGAAACGATGCAAGATCTCATTAAAAGTACCATTGAAGCCTGATGCAAGTCGAGATGAGGTCACTAATGCACTTGTTAAGGTGGCTTTAACCGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTTGTGCTGAATGTGGCTCAATATCTTGGATTGACAGGACCCGGGTATGTGTGGATAGCCACTAACTGGCTTTCTTTGCTACTCGACACAAATTCGCCTCTTCCTTCTGCTTCTATGGAAAATATTCAAGGACTTGTTGCTTTGCGTCTTTATACACCAGATTCTGCCCTCAAAAGGAATTTTGTTTCAAGGTGGACCAATTTGACTAATGGAAAGTCATCAATGGGTCCTCTTGGATTGAGTACTTATGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCAATAAATGCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAAACTTTCGAAGTTATCTGGGACTGATGTTGGAACTTTGAATTTGAACTCTATGAGCGTCTTCAATGGTGGGAAGACACTACTTCACAAAATTTTAGAAGTCAATTTTACTGGAATAACAGGTTCAGTTGAGTTCACTCCAGATAGGGACTTAATTCACCCTGCATTTGAAGTGATCAATATAATCGGCACAGGGGAAAGAAGAATTGGTTATTGGTCTAACTATTCTGGCTTGTCAATTGTGCCTCCTGAAACCCTTTACTCGAAACCACCAAACCGAACCAATTCAAATCAAAAGCTATATGATGTGGTATGGCCTGGACAAGCTACACAGAAGCCTCGTGGGTGGGCATTTCCAAACAGTGGAAGATACTTGAGAATTGGAGTTCCGAGACGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCACTGGCTACTGCGTTGATGTCTTCACTGCAGCAATCAACATGTTGCCTTATGCAGTCCCCTATAAGTTAATTCCTTTCGGGGATGGCCTTACTAATCCTAGCGAAACCGAACTTATTCGTCTAATCACAACTGGGGTCTTTGATGGAGCGATAGGTGACATTGCAATTATCACAAACCGAACCAGGATGGCAGATTTTACACAACCATACATCGAGTCTGGCCTAGTAGTTGTAGCTCCAGTCAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCAAAGATGTGGTGTGTTACTGCTGCTTCTTTTCTTGTAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGAATAAATGATGATTTTCGTGGCCCTCCGAAGAAACAAGTTATTACTATTCTATGGTTCAGCTTTTCAACTCTATTCTTCTCCCATCGGGAAAACACAGTCAGTGCCCTTGGTCGCCTCGTGCTGCTTATATGGTTATTTGTTGTTCTAATTATCAACTCAAGCTATACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTCAAAGGAATTGAAACTTTGATTTCAAACAACGACCCAATTGGCTACCAGCAGGGTTCATTTGCTCGAAACTACTTGATTGAGGAACTTGGCATTCATGAGTCAAGACTCGTTCCACTCATCTCAGCAGAACACTATGTCAAAGCCTTGAACGATGGGCCAGCAAATAATGGTGTTGCTGCTATAATCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCGTTGCGAATACAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCCCCGTGACTCTCCTTTAGCAGTTGACTTGTCCACAGCTATTCTAAGACTGTCCGAAAACGGGGATCTTCAAAGGATCCATGACAAATGGTTAATGAAAAGTGCTTGCACATCACAAGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGTTTGCTCGCTCTATCGATATACCTCTTTCAAATGGTGCGCCAATATAGCGAACATTACTCTGAAGAACTCGGGTCTTCTGAGCAAACCTCTCGATCTGCAAGCCTGCATAGATTCCTTTCTTTTGCAGATGAAAAGGAAGAAGCCTTCAGAAGTCGATCCAAGCAAAAACAGATGCAGGAAGCTTCAGTTAGAAGCATTAACGAAGAAATTTCCACAGGCAGTTCAAGAAAATTTGGCCATGGTTATACTGATGGTATTGATGATGCATGA 2676 41.67 MIGKVGKIAVEAAVEDVNSDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANEVQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYYQWKEVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLKPDASRDEVTNALVKVALTESRILVVHTYETTGMVVLNVAQYLGLTGPGYVWIATNWLSLLLDTNSPLPSASMENIQGLVALRLYTPDSALKRNFVSRWTNLTNGKSSMGPLGLSTYGLYAYDTVWMLAHAINAFLNEGGNLSFSKLSKLSGTDVGTLNLNSMSVFNGGKTLLHKILEVNFTGITGSVEFTPDRDLIHPAFEVINIIGTGERRIGYWSNYSGLSIVPPETLYSKPPNRTNSNQKLYDVVWPGQATQKPRGWAFPNSGRYLRIGVPRRVSYQEFVSQVEGTDMFTGYCVDVFTAAINMLPYAVPYKLIPFGDGLTNPSETELIRLITTGVFDGAIGDIAIITNRTRMADFTQPYIESGLVVVAPVKKLNSSAWAFLRPFTPKMWCVTAASFLVVGAVVWILEHRINDDFRGPPKKQVITILWFSFSTLFFSHRENTVSALGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLISNNDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPANNGVAAIIDERAYVELFLSTRCEYSIVGQEFTKNGWGFAFPRDSPLAVDLSTAILRLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALSIYLFQMVRQYSEHYSEELGSSEQTSRSASLHRFLSFADEKEEAFRSRSKQKQMQEASVRSINEEISTGSSRKFGHGYTDGIDDA 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33115803 33118962 + ClG42_01g0216500.10 Clacu01g2165 241549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2165 891 SUPERFAMILY Periplasmic binding protein-like II 407 772 - -
Clacu01g2165 891 Gene3D - 690 738 - -
Clacu01g2165 891 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 852 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu01g2165 891 MobiDBLite consensus disorder prediction 851 891 - -
Clacu01g2165 891 Gene3D - 540 666 - -
Clacu01g2165 891 CDD GluR_Plant 429 769 - -
Clacu01g2165 891 FunFam Glutamate receptor 540 670 - -
Clacu01g2165 891 Gene3D - 8 357 - -
Clacu01g2165 891 Pfam Receptor family ligand binding region 8 367 IPR001828 -
Clacu01g2165 891 PIRSF IGluLR_plant 1 884 IPR017103 -
Clacu01g2165 891 CDD PBP1_GABAb_receptor_plant 1 386 IPR044440 -
Clacu01g2165 891 SUPERFAMILY Periplasmic binding protein-like I 3 420 IPR028082 -
Clacu01g2165 891 FunFam Glutamate receptor 105 261 - -
Clacu01g2165 891 MobiDBLite consensus disorder prediction 857 880 - -
Clacu01g2165 891 FunFam Glutamate receptor 666 773 - -
Clacu01g2165 891 Gene3D - 739 769 - -
Clacu01g2165 891 FunFam Glutamate receptor 424 540 - -
Clacu01g2165 891 Gene3D - 105 382 - -
Clacu01g2165 891 Gene3D - 423 539 - -
Clacu01g2165 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 280 292 - -
Clacu01g2165 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 3 19 - -
Clacu01g2165 891 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 63 91 - -
Clacu01g2165 891 SMART GluR_14 430 771 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu01g2165 891 Pfam Bacterial extracellular solute-binding proteins, family 3 447 549 IPR001638 -
Clacu01g2165 891 Pfam Ligand-gated ion channel 771 802 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2165 Clacu-Chr1:33115803 Clacu11g2067 Clacu-Chr11:31582500 0.00E+00 dispersed
Clacu01g2165 Clacu-Chr1:33115803 Clacu02g0340 Clacu-Chr2:3105105 9.90E-282 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2165 K05387 - csv:101213408 1663.66