Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2175 ATGAAATGGCGAAATGTGAGTGATGGAGAAGAGATTGAGATCTGGGTAAATGACATGTTTCAACAACAGAGTGCTCATAATTCAAGCTTTCTTCAAAACAACTTATTAGTTCGTGATAAGCATATACCTTCTGATGCCTGCTTGATGGATCCCGCGAAGGGAAATAATAGTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCATGAACGGTTTGTTAATGCAGTGGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTAATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATCGACTTGCAAAATACCTTCCCGACTCCTCATCTGATGGGAAAAAGGCTGACAAGAAGGATTCTAATGATATTCTATCAAACATTGATGGCTCGTCAGGAATGCAAATTACTGAAGCACTTAAGCTGCAGATGGAGGTCCAGAAGCGATTGCATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACCTAAAGAAGATAATTGAAGAGCAACAAAAACTTAGTGGAGTTCTTTCAGGAGCTCCGGTTGCATCTGCCTTTTCAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGCTGATAAAAATGACCCTCCAACACCTGCACCCACATCTGAGTTTCCTCGCCAAGAGAAACCATCAAAGGAACATGCCCAAGCCAAGAGTGTCTCTATTGATGATTCTTTCTCATCTCATCACGAACCGTTGACGCCAGATTCTGGTTGCCATAGCTCCCGGAGTGAGAGTCCAAGGCCAGTGAAGAAGCAAAGACAGTACAGGGATGGTGCATTTGCCAAATCAGAGATGATACTTGCACATCAGATACTGGAGTCAAGTTTAAACTCCACTCACAAGGAATCACGCTCTGTTTTTCCAGCCAGGGAAAAGTTCGATCCTTCATCTGGAATATCAATAGGGGACGACAACCAGTTAGACTAA 1035 44.15 MKWRNVSDGEEIEIWVNDMFQQQSAHNSSFLQNNLLVRDKHIPSDACLMDPAKGNNSTSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKDSNDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPVASAFSAPASGDNCPEADKNDPPTPAPTSEFPRQEKPSKEHAQAKSVSIDDSFSSHHEPLTPDSGCHSSRSESPRPVKKQRQYRDGAFAKSEMILAHQILESSLNSTHKESRSVFPAREKFDPSSGISIGDDNQLD 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33191172 33194694 - ClG42_01g0217500.10 Clacu01g2175 241559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2175 344 MobiDBLite consensus disorder prediction 310 344 - -
Clacu01g2175 344 MobiDBLite consensus disorder prediction 280 294 - -
Clacu01g2175 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 122 IPR006447 GO:0003677(InterPro)
Clacu01g2175 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 124 IPR017930 -
Clacu01g2175 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 51 315 IPR046955 GO:0003700(InterPro)
Clacu01g2175 344 Pfam MYB-CC type transfactor, LHEQLE motif 153 199 IPR025756 -
Clacu01g2175 344 MobiDBLite consensus disorder prediction 127 149 - -
Clacu01g2175 344 MobiDBLite consensus disorder prediction 255 279 - -
Clacu01g2175 344 Pfam Myb-like DNA-binding domain 69 120 IPR001005 -
Clacu01g2175 344 Gene3D - 66 125 - -
Clacu01g2175 344 MobiDBLite consensus disorder prediction 214 297 - -
Clacu01g2175 344 SUPERFAMILY Homeodomain-like 66 121 IPR009057 -
Clacu01g2175 344 FunFam Myb family transcription factor 66 124 - -
Clacu01g2175 344 MobiDBLite consensus disorder prediction 127 143 - -
Clacu01g2175 344 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2175 Clacu-Chr1:33191172 Clacu10g1675 Clacu-Chr10:30103845 7.50E-44 dispersed
Clacu01g2175 Clacu-Chr1:33191172 Clacu01g2176 Clacu-Chr1:33198078 6.80E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47098 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2175 - - - 0.0