Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2176 ATGTTTCCCAGACTCGTTAATCCCGACGGAGATATCCAGATCCATGGCCCCCGTGGTTCTGTTGCTTCCGACCTAACCCACAGTCATCGAGGAGACCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGCCTCCGCTGGACTGCCGATCTTCACGAGCGATTCGTCGATGCCGTCACTCAGCTCGGTGGTGCTGGCAAAGCTACTCCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATCTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCATCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTACGAATAATTTCTCTCCTGACTTGCCAATTTCTGAAATGGCCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCGCAAATGGAAGTTCAAAGTAAATTACATCTGCAAGTTGAGGCAGAGAAGCACCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCCATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGCGCAGTTTCGGACTCAGACAGCAAGAAGTCCCAAGGACAGGATCGTAAGAGCCCAAGAGGTTCCTCCATTGACCCACTTGGTTTCTATGCTTCCCAATCGCAAGAGATGGAAAGAGTGAATGGCACGGAAGAAGTGCAGGCTAATCTCCCTTGCCAAAGGGCTGATTGTTCAACCGAAAGCTGCCTAACCTCCAACGAGAGTCCCGGAGGATTGGCTATGGAAAAATCTCCTGTTGCAAGCAAGAAAAACATGGTTAACTTGGATTCAGCAACTGCATCTTTGATTTGGGGTGAAGCTAAGGAAAGAATACAAGATGCTAACATCATCCAAGTTAACCATCACGGCGTATCTGGATGCGACATGTGGGGATGA 942 47.35 MFPRLVNPDGDIQIHGPRGSVASDLTHSHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGAGKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSTNNFSPDLPISEMADGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGQDRKSPRGSSIDPLGFYASQSQEMERVNGTEEVQANLPCQRADCSTESCLTSNESPGGLAMEKSPVASKKNMVNLDSATASLIWGEAKERIQDANIIQVNHHGVSGCDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33198078 33202908 - ClG42_01g0217600.10 Clacu01g2176 241560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2176 313 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Clacu01g2176 313 MobiDBLite consensus disorder prediction 1 26 - -
Clacu01g2176 313 Gene3D - 41 99 - -
Clacu01g2176 313 MobiDBLite consensus disorder prediction 191 216 - -
Clacu01g2176 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Clacu01g2176 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Clacu01g2176 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 291 IPR046955 GO:0003700(InterPro)
Clacu01g2176 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Clacu01g2176 313 FunFam Myb family transcription factor 41 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2176 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2176 Clacu-Chr1:33198078 Clacu05g0372 Clacu-Chr5:3194446 3.70E-42 dispersed
Clacu01g2175 Clacu-Chr1:33191172 Clacu01g2176 Clacu-Chr1:33198078 6.80E-21 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu05g1216 . 246 446 G2-like Transcription Factor Family AT5G16560 56.5 7.9e-45 178.3
Clacu09g1167 . 199 403 G2-like Transcription Factor Family AT5G16560 51.7 7.0e-41 165.2
Clacu05g2133 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.3e-40 161.0
Clacu08g1709 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Clacu05g2494 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.5e-53 204.9
Clacu08g0656 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.0e-52 201.4
Clacu03g0131 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 3.2e-60 229.2
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.1e-74 275.0
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.8e-69 257.7
Clacu05g0372 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.5e-88 322.4
Clacu02g1922 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Clacu07g0217 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 9.7e-40 161.0
Clacu09g2308 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.3e-39 160.6
Clacu01g2176 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Clacu11g1134 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 1.2e-49 194.1
Clacu09g2308 . 1 379 G2-like Transcription Factor Family AT1G79430 55.0 2.8e-86 315.8
Clacu02g1922 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.2e-74 274.6
Clacu01g2175 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.0e-56 216.1
Clacu04g0629 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Clacu10g1634 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.2e-82 301.6
Clacu04g0629 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.4e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47099 PF00249 Myb_DNA-binding 8.40E-06 CL0123 Clacu TF