Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2192 ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCCGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAATATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAATGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGCTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGATTTGCACACTCTAAGGCAGAGGCAACCAGGAAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGCGAAGGCCATGGAAGTGCCGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCACCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCGTCAACCAGTGAAAAGGCTGCAGCTATAGCAGCAGTTGCTGCAGATAAAAAAGCTTCCGATAATTATTTCGAATTTGATTTCTTTTAG 1839 43.72 MASIAGSKASSNQPQKPANGVMANGKDTGLLPPQISKSSKPASVTSDQSKSVKNISKKDMEICPDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAVAADKKASDNYFEFDFF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33290963 33294330 + ClG42_01g0219200.10 Clacu01g2192 241576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2192 612 MobiDBLite consensus disorder prediction 1 19 - -
Clacu01g2192 612 Gene3D Transferase(Phosphotransferase) domain 1 448 572 - -
Clacu01g2192 612 MobiDBLite consensus disorder prediction 162 190 - -
Clacu01g2192 612 FunFam Serine/threonine-protein kinase D6PK-like 215 300 - -
Clacu01g2192 612 Gene3D Phosphorylase Kinase; domain 1 215 300 - -
Clacu01g2192 612 SUPERFAMILY Protein kinase-like (PK-like) 192 580 IPR011009 -
Clacu01g2192 612 FunFam Serine/threonine-protein kinase AGC1-7 447 572 - -
Clacu01g2192 612 MobiDBLite consensus disorder prediction 115 140 - -
Clacu01g2192 612 MobiDBLite consensus disorder prediction 1 76 - -
Clacu01g2192 612 Gene3D Transferase(Phosphotransferase) domain 1 301 368 - -
Clacu01g2192 612 MobiDBLite consensus disorder prediction 89 140 - -
Clacu01g2192 612 CDD STKc_phototropin_like 216 577 - -
Clacu01g2192 612 FunFam serine/threonine-protein kinase D6PK-like 301 368 - -
Clacu01g2192 612 PANTHER FLIPPASE KINASE 1-RELATED 78 586 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2192 612 Pfam Protein kinase domain 218 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2192 612 Pfam Protein kinase domain 451 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2192 612 MobiDBLite consensus disorder prediction 100 114 - -
Clacu01g2192 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2192 612 ProSiteProfiles Protein kinase domain profile. 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2192 612 MobiDBLite consensus disorder prediction 31 51 - -
Clacu01g2192 612 SMART serkin_6 217 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2192 Clacu-Chr1:33290963 Clacu02g2251 Clacu-Chr2:35616986 1.80E-149 dispersed
Clacu01g1164 Clacu-Chr1:17491782 Clacu01g2192 Clacu-Chr1:33290963 5.30E-226 transposed
Clacu04g0157 Clacu-Chr4:3912043 Clacu01g2192 Clacu-Chr1:33290963 2.10E-150 transposed
Clacu05g0012 Clacu-Chr5:330238 Clacu01g2192 Clacu-Chr1:33290963 2.70E-176 transposed
Clacu10g1374 Clacu-Chr10:26810597 Clacu01g2192 Clacu-Chr1:33290963 1.00E-183 transposed
Clacu11g0425 Clacu-Chr11:3994231 Clacu01g2192 Clacu-Chr1:33290963 7.10E-115 transposed
Clacu01g2192 Clacu-Chr1:33290963 Clacu02g0316 Clacu-Chr2:2871310 2.10E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73277 PF00069 Pkinase 6.50E-38 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2192 K08286 - csv:101209748 1111.29