Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2192 | ATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAGCCACAAAAACCAGCTAATGGTGTAATGGCTAATGGAAAGGATACGGGGCTCTTGCCTCCGCAGATTTCGAAGTCAAGCAAACCTGCATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAATATCTCAAAGAAGGATATGGAAATATGTCCCGACAAAAAGTCACCAGTATCGAATCAAAATGGATCTGCTAAGTTGTTGACTGAAAAATTTAATTTCAGCATATCCTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGATAAATGTTCACCTGGAAGCTCCCTAGACCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGGCAAAGTAAGTGATGGGACTAGCTGTCTTGCCAAGACCAGTGGAAGTACAAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGAAAGAGCAGTATATGTCGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTCCGTGCAAAAGATGGGGCGATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTCTATCTCTCTGAGTTAAGGGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCAAGTCGTAAAAAGTTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAATCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACGGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGATTTGCACACTCTAAGGCAGAGGCAACCAGGAAAGCATTTTCCCGAGCAGGCAGTGAAATTCTATGTAGCAGAGGTTCTTCTTGCTCTGGAATACCTGCACATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTTCTTGTGAGGGAAGATGGACACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAATCCGACTCTTGTCAAAAATCTCTCTGCAGAGTCGGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCTCGTCTCTTTTCTAGTAAGTCAAAGAAGGAACGAAAACCCAAAATTGATATGGGAAATCAGGTCAGCCCATTGCCAGAGCTCATAGCAGAACCAACCGATGCCCGATCCATGTCTTTCGTAGGAACCCATGAGTACTTGGCACCTGAGATAATCAAGGGCGAAGGCCATGGAAGTGCCGTGGATTGGTGGACTTTTGGAATTTTTCTATACGAGCTACTATTTGGTAAAACTCCTTTCAAGGGGTCGGGAAATCGAGCTACATTATTCAACATTGTCGGTCAGCCACTTCGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGAGGATTGCTAGTGAAGGAACCACAACAAAGATTGGCTTATAAACGTGGAGCAACTGAGATTAAGCAGCATCCTTTCTTTGAAGGTGTAAATTGGGCATTAATACGTTGTGCCACTCCACCCGAAATCCCAAGGCCGGTCGAGATTGAGAGAATACCACATGCAGTGGCGTCAACCAGTGAAAAGGCTGCAGCTATAGCAGCAGTTGCTGCAGATAAAAAAGCTTCCGATAATTATTTCGAATTTGATTTCTTTTAG | 1839 | 43.72 | MASIAGSKASSNQPQKPANGVMANGKDTGLLPPQISKSSKPASVTSDQSKSVKNISKKDMEICPDKKSPVSNQNGSAKLLTEKFNFSISSPGLKQTSTEVDSPHNEDKCSPGSSLDQEKKTSEYGSVKSSSFSGKVSDGTSCLAKTSGSTKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELRGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVNPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKIDMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQQRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAIAAVAADKKASDNYFEFDFF | 612 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33290963 | 33294330 | + | ClG42_01g0219200.10 | Clacu01g2192 | 241576 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2192 | 612 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Clacu01g2192 | 612 | Gene3D | Transferase(Phosphotransferase) domain 1 | 448 | 572 | - | - | |
Clacu01g2192 | 612 | MobiDBLite | consensus disorder prediction | 162 | 190 | - | - | |
Clacu01g2192 | 612 | FunFam | Serine/threonine-protein kinase D6PK-like | 215 | 300 | - | - | |
Clacu01g2192 | 612 | Gene3D | Phosphorylase Kinase; domain 1 | 215 | 300 | - | - | |
Clacu01g2192 | 612 | SUPERFAMILY | Protein kinase-like (PK-like) | 192 | 580 | IPR011009 | - | |
Clacu01g2192 | 612 | FunFam | Serine/threonine-protein kinase AGC1-7 | 447 | 572 | - | - | |
Clacu01g2192 | 612 | MobiDBLite | consensus disorder prediction | 115 | 140 | - | - | |
Clacu01g2192 | 612 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Clacu01g2192 | 612 | Gene3D | Transferase(Phosphotransferase) domain 1 | 301 | 368 | - | - | |
Clacu01g2192 | 612 | MobiDBLite | consensus disorder prediction | 89 | 140 | - | - | |
Clacu01g2192 | 612 | CDD | STKc_phototropin_like | 216 | 577 | - | - | |
Clacu01g2192 | 612 | FunFam | serine/threonine-protein kinase D6PK-like | 301 | 368 | - | - | |
Clacu01g2192 | 612 | PANTHER | FLIPPASE KINASE 1-RELATED | 78 | 586 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Clacu01g2192 | 612 | Pfam | Protein kinase domain | 218 | 367 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2192 | 612 | Pfam | Protein kinase domain | 451 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2192 | 612 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
Clacu01g2192 | 612 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 338 | 350 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g2192 | 612 | ProSiteProfiles | Protein kinase domain profile. | 217 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2192 | 612 | MobiDBLite | consensus disorder prediction | 31 | 51 | - | - | |
Clacu01g2192 | 612 | SMART | serkin_6 | 217 | 554 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2192 | Clacu-Chr1:33290963 | Clacu02g2251 | Clacu-Chr2:35616986 | 1.80E-149 | dispersed | |
Clacu01g1164 | Clacu-Chr1:17491782 | Clacu01g2192 | Clacu-Chr1:33290963 | 5.30E-226 | transposed | |
Clacu04g0157 | Clacu-Chr4:3912043 | Clacu01g2192 | Clacu-Chr1:33290963 | 2.10E-150 | transposed | |
Clacu05g0012 | Clacu-Chr5:330238 | Clacu01g2192 | Clacu-Chr1:33290963 | 2.70E-176 | transposed | |
Clacu10g1374 | Clacu-Chr10:26810597 | Clacu01g2192 | Clacu-Chr1:33290963 | 1.00E-183 | transposed | |
Clacu11g0425 | Clacu-Chr11:3994231 | Clacu01g2192 | Clacu-Chr1:33290963 | 7.10E-115 | transposed | |
Clacu01g2192 | Clacu-Chr1:33290963 | Clacu02g0316 | Clacu-Chr2:2871310 | 2.10E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73277 | PF00069 | Pkinase | 6.50E-38 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2192 | K08286 | - | csv:101209748 | 1111.29 |