Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2210 ATGCAAGCATCCCAGAATCGGCAGGCTTCATCTGTGATCCATGAGATGTATCAACAGTCTGTTCAAGAGATGGATCCTTACTATTTATCTCATTTTCACGTATTGGGAAACCATGTCTCTCCTGACACAAGCAGCCAGGGAAACAGTGTTAACTTCTCTTCCTGTAAGGATCAGTTCTTTACTCTGGAATCATTCCCGGCTACTGCTGATCTGAGTGCCTGTAATTCACCTTCTGCTGTGAGTGTTCTGTCTTCCAGGAGCCCCTTCTCACCTCAAGGTTCTCAGTCATGCTCTTCAGATCAACACCATTCCTTTGACAACACATGTGGATCACCTCTAAGTGGATGCTCTGTAACTGATGACGATAACGAATTAAAGCACAAGCTGAAAGAATTAGAAATTTCTTTGCTGGGGCCTGAATCTGATATTGTGGATAGCTGCTACTGTTCTTTCAGGGGTGGGGGTCATCGAGATGCTTCCATGGCAAGGCGGAACTGGAATCAAGTGGTTGAAATGATTCCTAGATTAAGTCTTCAAGACACGCTTATCCATTGTGCCCAAGCGATTCATGATTCCGATCTAAATGTGGCAACATTATTTTTGGATGTTTTAGGGCAGATGGTTTCTGTCTCTGGTGATCCAGCCCAGAGGTTGGGAGCTTACTTGTTGGAAGGGCTTAGAGCAAGGTTGGAACGATCTGGAAGTGCAATATACAAGGCCTTAAAGTGTGAAGAGCCAACAAGCTCTGAACTAATGTCATATATGTCTATTCTATTCCAGATCTGCCCGTACTTCAAATTTGGTTACACTTCTGCGAATGCTGTCATTTGGGAGGCCATGGTAAATGAACCAATAATCCACATTATTGATTTTCAAATCGCACAGGGTAGTCAGTATATACCTCTCATCGATGATCTTGCCAATCGGCCTGGTGGACCCCCAGTTCTTCGCATTACAGGTGTGGACGATTCCCAATCAGCTCATGCTCGAGGAGGGGGACTACAAATTGTGGGACAGAAGTTAGCTCAGCTGGCTCAATCAAAAGGAATTCCCTTCCAATTTCATGCAGCTGCAATGTCTGGTTGCGAGGTCGAACGCAGTAATCTTAGAATACGACCTGGAGAAGCCTTGGCCGTAAATTTTCCATATGCCTTACACCACATGCCAGATGAGAGCGTGAGCACACAGAATCACCGAGACCGGCTTCTAAGGCTAGTTAAGAGTCTATCACCGAAAGTAGTAACCATTGTTGAGCAGGAATCCAACACCAACACATCCCCGTTCCTTCTTCGCTTTATAGAGACACTGGATTATTACACTGCTATGTTCGAGTCAATAGATGTAGCTCGTTCAAGAGACGACAAGCAGCGAATCAGGGCAGAGCAACACTGTGTCGCTCGAGACATAGTGAACATGGTAGCTTGTGAAGGGTTTGAAAGGGTAGAACGTCATGAACTCCTTGGCAAGTGGAGGATGAGAATGAGAATGGCTGGTTTCACTCCATGTCCAATGAGCTCCTCTGTAACTGGAGCTGTCAAGAATATGTTGAGGGATTTCAACGAGAACTACAGACTCCAAGAAGTGGATGGCGCTATCTACCTCGGCTGGAAAAACAGAGCAATGGCAACCTCCTCTGCATGGAGATGA 1647 45.66 MQASQNRQASSVIHEMYQQSVQEMDPYYLSHFHVLGNHVSPDTSSQGNSVNFSSCKDQFFTLESFPATADLSACNSPSAVSVLSSRSPFSPQGSQSCSSDQHHSFDNTCGSPLSGCSVTDDDNELKHKLKELEISLLGPESDIVDSCYCSFRGGGHRDASMARRNWNQVVEMIPRLSLQDTLIHCAQAIHDSDLNVATLFLDVLGQMVSVSGDPAQRLGAYLLEGLRARLERSGSAIYKALKCEEPTSSELMSYMSILFQICPYFKFGYTSANAVIWEAMVNEPIIHIIDFQIAQGSQYIPLIDDLANRPGGPPVLRITGVDDSQSAHARGGGLQIVGQKLAQLAQSKGIPFQFHAAAMSGCEVERSNLRIRPGEALAVNFPYALHHMPDESVSTQNHRDRLLRLVKSLSPKVVTIVEQESNTNTSPFLLRFIETLDYYTAMFESIDVARSRDDKQRIRAEQHCVARDIVNMVACEGFERVERHELLGKWRMRMRMAGFTPCPMSSSVTGAVKNMLRDFNENYRLQEVDGAIYLGWKNRAMATSSAWR 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33387562 33389208 + ClG42_01g0221000.10 Clacu01g2210 241594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2210 548 ProSiteProfiles GRAS family profile. 169 548 IPR005202 -
Clacu01g2210 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 150 547 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu01g2210 548 Pfam GRAS domain family 179 548 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2210 Clacu-Chr1:33387562 Clacu02g0968 Clacu-Chr2:13335426 6.50E-159 dispersed
Clacu01g2210 Clacu-Chr1:33387562 Clacu10g2088 Clacu-Chr10:34216627 1.40E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47101 PF03514 GRAS 6.30E-127 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2210 K27748 - csv:101207883 996.882