Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2229 ATGGCGACCTCATGTTTCGGTTCACTTAGGATTCGTAAATCGAAGAGCAAACCCTTATCAACCCCTTCCTCGTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCAATGATCCTAGAGTCTGAAAATGTGGAAACCTGGGAGACAGCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAACTCTTCATTGGTAACAAATTTGCCTCTGGTGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGAATTCCAAACCAAAAAGAGGAAACAAGAGCCAAACTCGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATATTGAGGTTAGCTCTTGACATATCAAGAGGAATGGAATACCTCCATTCCCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAATGATGAAATGAGAGTAAAAGTAGCCGATTTCGGAACATCCTGCCTCGAAACACAGTGCCGAGAATCAAAAGGGAACATGGGAACTTACCGATGGATGGCGCCGGAGATGATCAAGGAGAAGCCTTATACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTTACCACGGCTCTGCTTCCGTTTCAAGGGATGACCCCCGTGCAAGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCACCATTACCGGCGAGTTGTCAGCCGGCACTAGCCCACCTGATAAAGCGGTGTTGGGCGGCGAATCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGATGAGTGTGTGAAAGAGGGTCTTCCCCTTGCACACCATAGGAGATTGGTAAACCGAAACGCCATTATCGAACGCTTGAAAGCTTGCGCTTCAACCAGTTCTTCAATCCCTGTACATGCCTAA 1122 46.17 MATSCFGSLRIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETAKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIERLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33489435 33490844 - ClG42_01g0222900.10 Clacu01g2229 241613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2229 373 PANTHER SERINE-THREONINE PROTEIN KINASE 55 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu01g2229 373 CDD STKc_MAP3K-like 83 327 - -
Clacu01g2229 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 SUPERFAMILY Protein kinase-like (PK-like) 52 327 IPR011009 -
Clacu01g2229 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Clacu01g2229 373 MobiDBLite consensus disorder prediction 14 31 - -
Clacu01g2229 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 Pfam Protein tyrosine and serine/threonine kinase 79 329 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2229 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
Clacu01g2229 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
Clacu01g2229 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Clacu01g2229 373 MobiDBLite consensus disorder prediction 13 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1361 Clacu-Chr1:24907993 Clacu01g2229 Clacu-Chr1:33489435 2.80E-108 dispersed
Clacu01g2229 Clacu-Chr1:33489435 Clacu01g2385 Clacu-Chr1:34526617 1.70E-89 dispersed
Clacu01g0202 Clacu-Chr1:1975997 Clacu01g2229 Clacu-Chr1:33489435 2.70E-24 transposed
Clacu02g0408 Clacu-Chr2:3661774 Clacu01g2229 Clacu-Chr1:33489435 4.70E-67 transposed
Clacu02g1986 Clacu-Chr2:33329903 Clacu01g2229 Clacu-Chr1:33489435 5.50E-31 transposed
Clacu05g1691 Clacu-Chr5:25574193 Clacu01g2229 Clacu-Chr1:33489435 4.10E-66 transposed
Clacu08g0837 Clacu-Chr8:18389868 Clacu01g2229 Clacu-Chr1:33489435 6.10E-62 transposed
Clacu10g0039 Clacu-Chr10:798985 Clacu01g2229 Clacu-Chr1:33489435 1.70E-69 transposed
Clacu11g1310 Clacu-Chr11:22301673 Clacu01g2229 Clacu-Chr1:33489435 1.10E-78 transposed
Clacu01g2229 Clacu-Chr1:33489435 Clacu03g0420 Clacu-Chr3:4611594 1.60E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73278 PF07714 PK_Tyr_Ser-Thr 5.30E-68 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2229 - - - 0.0