Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2242 ATGATGAATTTTGGAAATCAAAATAATAATAATAATAATAATAATAGTAATGGGTTATGTTCTATGATGATGATGCCATTGATCTCCTCCTCTTCTCAACAAGGAGGAAATGGGTCATGTACTCCATTTCTTCCTCTTCCTCCTAATTACAACAACAACAATAATAATACTTCCAATTCTATTTGTAATTACTTCATGGATGAAAACAACAACAACAACAACGAGGGTAGTAATGGAGGAGGGAATTCTTGTTGTGAAGTAAAGGCTAAAATCATGGCTCATCCCCACTACCACCGTCTCCTCGCTGCTTATGTCAATTGTCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTCGGCTTGAAGAAGTGTGTGCAAGTGCAGCAATAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAAATGCTCACTAAATATGAACAAGAACTTTCTAAACCCTTTAGAGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCCCTCTCTATCTCTTCCTCTCACGCCGCTGCTTGTGGCGAGGCATTTGATAGGAACGGATCGTCTGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCTCAGGCAGAAGATCGTGAACTGAAAGGTCAGCTGCTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAGTGGCCTTACCCTTCAGAATCACAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAACAATTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTGGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAA 1023 41.94 MMNFGNQNNNNNNNNSNGLCSMMMMPLISSSSQQGGNGSCTPFLPLPPNYNNNNNNTSNSICNYFMDENNNNNNEGSNGGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEVCASAAIMSGNSSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIDSQFKALSISSSHAAACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33593647 33596872 + ClG42_01g0224200.10 Clacu01g2242 241626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2242 340 Gene3D - 247 309 - -
Clacu01g2242 340 Pfam KNOX2 domain 137 183 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu01g2242 340 CDD homeodomain 254 306 IPR001356 GO:0003677(InterPro)
Clacu01g2242 340 SMART ELK_2 222 243 IPR005539 GO:0003677(InterPro)
Clacu01g2242 340 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677(InterPro)
Clacu01g2242 340 Pfam ELK domain 222 243 IPR005539 GO:0003677(InterPro)
Clacu01g2242 340 SMART KNOX2_2 134 185 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu01g2242 340 Pfam KNOX1 domain 87 125 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu01g2242 340 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 104 312 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu01g2242 340 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g2242 340 SMART HOX_1 244 309 IPR001356 GO:0003677(InterPro)
Clacu01g2242 340 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677(InterPro)
Clacu01g2242 340 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu01g2242 340 SMART KNOX1_2 85 129 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu01g2242 340 FunFam Homeobox protein knotted-1-like 2 247 309 - -
Clacu01g2242 340 SUPERFAMILY Homeodomain-like 244 318 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2242 Clacu-Chr1:33593647 Clacu05g1924 Clacu-Chr5:28447496 1.00E-77 dispersed
Clacu01g2242 Clacu-Chr1:33593647 Clacu02g0227 Clacu-Chr2:2135320 2.20E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47103 PF03791 KNOX2 5.20E-20 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2242 - - - 0.0