Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2249 ATGGCTTTCCCATTATTATTCCTCTTTTTCCTACCTACAATTATCTCCACTCCCAACCCCAACAACTATTATAGCGAACCAGCCCTCAACCCCATCGACGCATGCTGGCGGAGCAATCCCAATTGGGCAGCCAACCGCCAAGCCTTGGCGGACTGCGCCGTCGGGTTCGGCAGCGACGCCACGGGAGGCAAATACGGGTCAATCTACGTGGTCACAGACCCATCGGACGACCCGGAATATCCGGAACCCGGAACGCTGCGTTTTGGGGTTATTCAAACGGAGCCGTTATGGATTGTATTCGCAACAGATATGGCGATTACCCTTAAAAGAGAACTGATGGTGAACAGCTTTAAGACCATAGACGGGCGAGGGGCAAAAGTGGAAATTAGTAATGGGCCATGTATTACTATCCAAAACGTGAGCCACGTCATAATCCACGGCATTAGCATCCATGATTGTAAGCCGGGGAAGCCTGGGCGCGTGAGAAGCACCGTCACTCACTGTGGGGACCGCCGCGAGTCGGACGGTGACGCCATTTCTATATTCAGTTCTTCCCATATTTGGATCGACCATTGCTATTTAGCTCGATGCACTGATGGACTCATTGACGTCATCCATGCCTCCACTGCCGTCACCATCTCCAACAATTACCTCACTCAACATGATAAAGTGATCCTTCTTGGTCACAACGATGACTTTACAGATGATAGAATCATGAAAGTGACTGTAGCTTTCAATCGTTTTGGCGATGGGCTTGTTCAAAGAATGCCAAGGGTAAGATTTGGGTATGCTCATGTTGCTAATAATTGGTACAACAAGTGGGAAATGTACGCTATGGGTGGCAGTGCAGATCCAACCATCTTCAGCCAAGGAAACTACTTCATGGCTCCCGATGACTCATTGTCAAAACAAGTTACAAAGAGAGAGGTTTATGCGAATGGATGGAAGAAATGGAAATGGAGATCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTGTCCCATCTGGGTGGGGATCTTGTAAGCCTTTCTACACTCAAGCTCAAGCATTTGCTGTTGCTCATGGCTCTTTGGCGCCTCTTTTGACTGAAACTGCTGGCACTTTGAGTTGTGTTCTTGCTAAACCTTGTTGA 1134 47.88 MAFPLLFLFFLPTIISTPNPNNYYSEPALNPIDACWRSNPNWAANRQALADCAVGFGSDATGGKYGSIYVVTDPSDDPEYPEPGTLRFGVIQTEPLWIVFATDMAITLKRELMVNSFKTIDGRGAKVEISNGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSTVTHCGDRRESDGDAISIFSSSHIWIDHCYLARCTDGLIDVIHASTAVTISNNYLTQHDKVILLGHNDDFTDDRIMKVTVAFNRFGDGLVQRMPRVRFGYAHVANNWYNKWEMYAMGGSADPTIFSQGNYFMAPDDSLSKQVTKREVYANGWKKWKWRSSNDVFLNGAYFVPSGWGSCKPFYTQAQAFAVAHGSLAPLLTETAGTLSCVLAKPC 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33634586 33637603 + ClG42_01g0224900.10 Clacu01g2249 241633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2249 377 PANTHER PECTATE LYASE 18-RELATED 19 372 IPR045032 GO:0030570(InterPro)
Clacu01g2249 377 SMART amb_all 103 300 IPR002022 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 348 371 IPR018082 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Clacu01g2249 377 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Clacu01g2249 377 Gene3D - 29 370 IPR012334 -
Clacu01g2249 377 Pfam Pectate lyase 110 294 IPR002022 -
Clacu01g2249 377 SUPERFAMILY Pectin lyase-like 30 368 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2249 Clacu-Chr1:33634586 Clacu03g0334 Clacu-Chr3:3829960 8.90E-123 dispersed
Clacu01g2249 Clacu-Chr1:33634586 Clacu03g0446 Clacu-Chr3:4864770 4.20E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2249 K01728 - csv:101210816 709.138