Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2251 | ATGGACAAAGGATGGGGTCTAACCCTCCGTGATTCTGATCAGTCAATTGGGTTCTTCTCAAACAAGCCACCACCACCGCCGACCACTGTCAATTCCTTTCAAAGAATGTTTCAAGGTTTAGAATTCCCCGGAAAACTTGGCCGGACTGACGACACCGACGCCACTCCGTCTCTAGCCGACGAGAATCGGCTGCCCGTCAACGAGGTGGACTTTTTCTCCGATAAGAAAAGAGTGGTTGATGATCGGGAGGATCAAGACTCTAAACCTTCCACTAATATTATCGCCACCACCGCCATCAATAAAGACGATAAGCCTTTTACCGCTCCCAGAACTTCCTTCAATCTTGTTAACACTGGGTTGCATCTGTTAACTGCTAACACTGGAAGCGATCAATCAACGGTGGATGATGGAATTTCTTCAGATGGTGAAGATAAACGAGCCAAAAACGAGCTAGCGCAACTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTTAGAGACATGCTAAGCCATGTGAGCAACAACTATAGTTCTTTACAAATGCATCTCTTGACCTTAATGCAACAGCAACAACAAAATCAGGCTTCCGAACCCGCTCATGAAAGAGAGATTGGGGAGAAGAAATCGACGGAAATAAAACATGAAGTTGGAAGGGTAATGGTACCAAGACAATTTATGGATCTAGGACCAAGTGGGAACAACAACAACAACAACACGGGTGAAAGCGATGAACTATTATGTAATTCCTCGTCGGATGAAAGAACTCGTTCTGGGTCTCCATTGAACAACAACAATACCACCGAAACCGCCTCCAAAAAAAGAGATCACGCGGAAATCACGGCTCCTTCCGATCACGAAAATTCCAAAAGACCCAACCCCAGAGAAGAAAGCCCCGAATCAGAATCTCAAGGTTGGGGTGGTCCGAACCATAAGCCCCCTCGGTTCAACTCTTCTAAACCACTTGACCAATCAACCGAAGCCACCATGCGTAAAGCCCGTGTCTCAGTCCGTGCTCGATCCGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCATGTCCACGAGCCTATTATCGCTGCACAATGGCCGTGGGTTGCCCAGTTCGTAAACAAGTCCAACGTTGTGCTGAAGATAGGACTATATTGATAACAACTTACGAAGGCAACCACAACCATCCACTTCCGCCGGCAGCGATGGCCATGGCGTCAACTACGACGGCGGCGGCTACCATGTTGTTATCAGGGTCTATGTCAAGTGCAGACCATAATTTAATGAACCCAAATTTATTGGCTCGAGCCATACTTCCATGTTCTTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACTCCAAACCCATTACAGTTTCAAAGACCCGCAGCGACGCCTTTCCACGTGCCATTCCCCGGCGGACAACCACCGTCGGCCGCCGTTGCCGCCCAGTTGCCTCAAGTTTTGGGGCAAGCGTTGTATAATAATCAATCAAAATTCTCGGGGCTACAGCTTTCTCATGAGATGGGGGCTAATTCCTCTCATTTGGGTCATCACCAAATTACACAACCGGCGACTCCGGCCCAGCCTGGTGGTGCTTCTTTTGCCGACACGTTGAGTGCCGCCACCGCCGCTATTACCGCCGATCCTAATTTCACCGCCGCTCTCGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCGAATAATAATAGCAATACAAACACCACCAATAATACTACAACAACAAACAACAACAACGGAAGCAGCAACAACAGCAAAATTAGCAGCTTCCCTGGAAATTAA | 1872 | 48.08 | MDKGWGLTLRDSDQSIGFFSNKPPPPPTTVNSFQRMFQGLEFPGKLGRTDDTDATPSLADENRLPVNEVDFFSDKKRVVDDREDQDSKPSTNIIATTAINKDDKPFTAPRTSFNLVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVSNNYSSLQMHLLTLMQQQQQNQASEPAHEREIGEKKSTEIKHEVGRVMVPRQFMDLGPSGNNNNNNTGESDELLCNSSSDERTRSGSPLNNNNTTETASKKRDHAEITAPSDHENSKRPNPREESPESESQGWGGPNHKPPRFNSSKPLDQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAATMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAATPFHVPFPGGQPPSAAVAAQLPQVLGQALYNNQSKFSGLQLSHEMGANSSHLGHHQITQPATPAQPGGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNSNTNTTNNTTTTNNNNGSSNNSKISSFPGN | 623 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33655052 | 33657422 | + | ClG42_01g0225100.10 | Clacu01g2251 | 241635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 231 | 271 | - | - | |
Clacu01g2251 | 623 | FunFam | probable WRKY transcription factor 31 | 333 | 410 | - | - | |
Clacu01g2251 | 623 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 133 | 592 | IPR044810 | GO:0003700(InterPro) | |
Clacu01g2251 | 623 | Pfam | WRKY DNA -binding domain | 350 | 407 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2251 | 623 | Coils | Coil | 144 | 178 | - | - | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 272 | 300 | - | - | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 587 | 623 | - | - | |
Clacu01g2251 | 623 | SMART | WRKY_cls | 348 | 408 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 533 | 550 | - | - | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 202 | 223 | - | - | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 191 | 331 | - | - | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Clacu01g2251 | 623 | SUPERFAMILY | WRKY DNA-binding domain | 341 | 409 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2251 | 623 | MobiDBLite | consensus disorder prediction | 533 | 554 | - | - | |
Clacu01g2251 | 623 | Gene3D | WRKY domain | 333 | 410 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu01g2251 | 623 | ProSiteProfiles | WRKY domain profile. | 343 | 409 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2251 | Clacu-Chr1:33655052 | Clacu06g1741 | Clacu-Chr6:28004319 | 8.20E-41 | dispersed | |
Clacu01g2251 | Clacu-Chr1:33655052 | Clacu02g0209 | Clacu-Chr2:2011659 | 4.00E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47104 | PF03106 | WRKY | 5.50E-24 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2251 | - | - | - | 0.0 |