Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2263 ATGGGGAAGAAGAAGCTGAGCCTGCAAAATCAAGGCTCTCATGTTATATTAGACAATGGATTGTTGAAGGTGACGATGTCAAACCCGCAAGGGTATGTAACTGGCATCATGTATGGGGGCATGGACAATCTGTTAGATGTAAAATCAAGCGAGTCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTCAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATTGAGATATCATTCAGGAGAGTTTTCAACCCGTCAATTCAAGGCAACAAACTCCCGCTTGCTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCATCAGAAGGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTTTTTAAACTGCGACAAGAGAAGTTCCATTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCTGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCGATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCACGAGTTCCGAAATGGAGGTCCTACGAAGCAAAATCTGACAGTCCATACCGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGAGAAACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGATGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAGTGCTGGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTTTATTTCATGGCAAATGAACGTGGTTCCATTTCAGGAAGACTATTAGTCCAAGACAGGTTTATTTCAAGTTCCCCCATCCCTGCGAGAGATGCACATATTGGTTTATCCGCTGCTAGAGAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAATTTTGGGTAAAAACAGATTCCAAAGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGATTCATTGGTGATTATCTTCACAAATCACTAGTAACTGTATCTGCAGGATCTCATACCCATCTTGGAATTCTGACCTATAGTCCTCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTATCCTGACCGTACAGCTAATAGTTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGCTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACACTGATTTATATCCAAGAAATGACCAAGTTTTCACCGTGGGTATCAATGATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGCAGAGGAGGGGAAGATGGTAAGTATGTTGCGGCAACATGGACTATTAAGTTCAACATGACATCCTTAAGTGATGGAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGGACTTGAAGATTAATGTCAACTCAATGGGGTCGGAGTCGACTCTGGTCTTCCAGCTGATGAATCTGGGAATGGATAACACAGTTTGTCGACATGGAATTCATGGACTGTATCGAATTTATAGTATCGACATTCCATCTTCACTGCTTGTTAAGGGCGATAACTCCATATTTCTCACGCAGGCAAGGAATGGAGATCCACTCTGTGGAGTTTTATACGATTATTTAAGATTGGAAGCTCCTGATACTCCATGA 1908 42.24 MGKKKLSLQNQGSHVILDNGLLKVTMSNPQGYVTGIMYGGMDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRRVFNPSIQGNKLPLAVDIRYIMRTGIPGFYCYAIYEHPSEGRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGETWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRVLEETAWPYNFVSSSFYFMANERGSISGRLLVQDRFISSSPIPARDAHIGLSAAREEGAWQTESKEYQFWVKTDSKGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSHTHLGILTYSPLRDGPTLWEIGYPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYTDLYPRNDQVFTVGINDPKKDWFFAQVCRGGEDGKYVAATWTIKFNMTSLSDGTYRLRLAIASATRSDLKINVNSMGSESTLVFQLMNLGMDNTVCRHGIHGLYRIYSIDIPSSLLVKGDNSIFLTQARNGDPLCGVLYDYLRLEAPDTP 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33712652 33716224 + ClG42_01g0226300.10 Clacu01g2263 241647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2263 635 CDD RGL4_C 443 630 - -
Clacu01g2263 635 CDD RGL4_M 332 429 IPR029413 -
Clacu01g2263 635 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 633 IPR051850 -
Clacu01g2263 635 Gene3D - 439 629 - -
Clacu01g2263 635 SUPERFAMILY Starch-binding domain-like 327 430 IPR013784 GO:0030246(InterPro)
Clacu01g2263 635 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
Clacu01g2263 635 CDD RGL4_N 6 299 - -
Clacu01g2263 635 Gene3D - 6 303 IPR014718 GO:0030246(InterPro)
Clacu01g2263 635 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Clacu01g2263 635 Pfam Polysaccharide lyase family 4, domain II 357 427 IPR029413 -
Clacu01g2263 635 Gene3D - 329 431 - -
Clacu01g2263 635 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Clacu01g2263 635 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2263 Clacu-Chr1:33712652 Clacu11g1655 Clacu-Chr11:27769025 1.40E-200 dispersed
Clacu01g2263 Clacu-Chr1:33712652 Clacu08g1310 Clacu-Chr8:23054904 2.50E-202 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2263 K18195 - csv:101220336 1236.86