Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2272 ATGGCTTGCTCAAACTTCACAATGTGGGTGTCCTCAAAACCGTCTTCATCCGATTCCTCCGCTCTTTCTTTTGGGCCTTTTAATCCTCTTCAACTTCCTTCGCAAGGCTCTGCCTCGCGATCCTCATCTGTTACTCCGATTCAGTGTGGCCTCCGTGAGCTTCGAGAACGGATTGATTCAGTGAAGAACACCCAGAAAATTACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTGCGTAGAGCACAAGAAGCTGTTGTTAATGGAAGACCATTCTCGGAGTCTCTAGTTGAAGTTCTTTACAATATCAACGAGCAGCTCCAAACCGAAGATATAGATGTTCCTCTCACAAAAGTCCGACCAGTCAAGAAGGTTGCTTTGATTGTTGTAACAGGGGATCGAGGCCTTTGCGGCAGTTTTAATAACATGATCATCAAAAAGGCAGAATCCAGAATCGCAGAATTGAAGACCCTTGGCCTTGATTATACAGTTATTAGCGTCGGCAAGAAGGGGAATTCGTATTTCCTTCGCCGGCCTTACATCCCAGTAGATAGATTTCTTGAGGGCGGTTCACTTCCAACAGCTAAAGAAGCTCAAGCCATTGCAGACGATGTTTTTTCCCTCTTTATTAGCGAGGAGGTCGACAAAGTCGAGCTTCTGTACACCAAATTCGTGTCATTAGTTAAATCAGACCCTGTGATCCACACTCTGCTTCCATTGTCACCTAAAGGAGAGATTTGTGATATTAATGGTGTTTGTGTTGATGCCGCAGAGGACGAGTTCTTCAGATTGACGACAAAAGAAGGAAAATTGACCGTAGAGAGAGATGCAGTGAGGACAAAAACCTCAGATTTCTCCCCAATTTTACAGTTTGAGCAGGACCCAGTTCAGATTCTTGATGCTTTATTACCTCTGTATTTGAACAGTCAAATTTTGAGGTCATTGCAGGAATCATTAGCTAGTGAACTTGCGGCCAGAATGAGTGCCATGAGCAATGCAACTGATAATGCAAGCGAGTTGAAGAAGACACTCTCTATTGTTTACAACAGACAGCGGCAAGCAAAAATCACCGGCGAGATTTTGGAGATTGTTGCTGGTGCCAACGCTTTAACTTGA 1116 44.27 MACSNFTMWVSSKPSSSDSSALSFGPFNPLQLPSQGSASRSSSVTPIQCGLRELRERIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSESLVEVLYNINEQLQTEDIDVPLTKVRPVKKVALIVVTGDRGLCGSFNNMIIKKAESRIAELKTLGLDYTVISVGKKGNSYFLRRPYIPVDRFLEGGSLPTAKEAQAIADDVFSLFISEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRSLQESLASELAARMSAMSNATDNASELKKTLSIVYNRQRQAKITGEILEIVAGANALT 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33764821 33765936 - ClG42_01g0227200.10 Clacu01g2272 241656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2272 371 FunFam ATP synthase gamma chain, chloroplastic 49 116 - -
Clacu01g2272 371 NCBIfam ATP synthase F1 subunit gamma 50 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 Hamap ATP synthase gamma chain [atpG]. 48 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 Pfam ATP synthase 51 370 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 117 - -
Clacu01g2272 371 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 50 370 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 Gene3D - 118 241 - -
Clacu01g2272 371 Coils Coil 51 71 - -
Clacu01g2272 371 FunFam ATP synthase gamma chain, chloroplastic 118 241 - -
Clacu01g2272 371 ProSitePatterns ATP synthase gamma subunit signature. 356 369 IPR023632 -
Clacu01g2272 371 CDD F1-ATPase_gamma 51 367 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 PANTHER ATP SYNTHASE GAMMA CHAIN 1 370 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Clacu01g2272 371 PRINTS ATP synthase gamma subunit signature 348 369 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 PRINTS ATP synthase gamma subunit signature 215 232 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 PRINTS ATP synthase gamma subunit signature 122 141 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 PRINTS ATP synthase gamma subunit signature 317 336 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g2272 371 Gene3D ATP synthase, gamma subunit, helix hairpin domain 268 370 - -
Clacu01g2272 371 FunFam ATP synthase gamma chain, chloroplastic 267 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2272 Clacu-Chr1:33764821 Clacu10g0519 Clacu-Chr10:6286688 5.00E-102 dispersed
Clacu01g2272 Clacu-Chr1:33764821 Clacu03g0464 Clacu-Chr3:5009546 2.00E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2272 K02115 - csv:101218747 674.855