Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2286 ATGATCTCTTCACTGAGGCTTACATCTACCAATTACACTTCCTCTGAAATTTTGAACAGAAAATCTCCAGTTCTGAGGCCGAATCTTCCATTGCAGTCCCCGGATTGCAGTGCCCTTAAACATGTCGATCGGTCTCTTTCTACCAACAAACCACTTCACATCTCGTCCGTTGAAAATCTTTCTTTGCCCACAAAATCATTGGAGCGTTCGACGGTGTCCATGGCTTATGAGGCCGAATCGCGGCCTCTGCAGATTAACATTGAGCTTCCTGATGAACAAACGACACAGAAACTCAAAATTGGACTCTATTTCGCCACTTGGTGGGCTTTGAATGTGGTGTTCAATGTCTACAACAAGAAGGTTCTTAATGCCTTCCCTTTTCCTTGGCTCACTTCCACTCTCTCCCTCGCCGCTGGATCGCTCATGATGCTCGTTTCTTGGGCGACTCGAATGGTCGCAGTGGCACATACGATTGGGCATGTTGCAGCAACTGTGAGCATGTCCAAAGTTGCAGTCTCATTCACTCACATAATCAAGAGTGGGGAGCCGGCTTTTAGCGTGCTGGTCTCTAGGTTTCTGTTGGGTGAGATGTTTCCATTGCCTGTTTACTTATCTCTTATCCCAATCATCGGAGGGTGCGCTCTTTCCGCCTTTACTGAGCTCAATTTCAACATGATTGGTTTCTCGGGAGCGATGGTATCGAACTTGGCATTTGTGTTTAGAAACATATTTTCGAAGAAAGGGATGAAGGGAAAGTCAGTTAGTGGGATGAATTACTATGCTTGCCTCTCATTGCTCTCTCTGCTAATTCTTACTCCTTTCGCCATTGCTGTGGAGGGACCCAAGTTGTGGGCTGAAGGATTCCAAAAGGCTCTCTCTCAAATTGGTCCCAATTTCATTTGGTGGTTGGGAGCTCAAAGTATGTTCTATCACTTGTACAATCAAGTGTCTTACATGTCTCTTGATCAGATATCGCCATTGACATTCAGCGTTGGTAACACAATGAAGAGAATATTCGTAATAGTATCATCCATTATCATCTTCCACACGCCTATCCGACCCGTAAACGCCATTGGAGCTGCCATTGCAATCCTTGGAACGTTCCTCTACTCGCAGGCAAAGCTGTGA 1128 45.74 MISSLRLTSTNYTSSEILNRKSPVLRPNLPLQSPDCSALKHVDRSLSTNKPLHISSVENLSLPTKSLERSTVSMAYEAESRPLQINIELPDEQTTQKLKIGLYFATWWALNVVFNVYNKKVLNAFPFPWLTSTLSLAAGSLMMLVSWATRMVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEMFPLPVYLSLIPIIGGCALSAFTELNFNMIGFSGAMVSNLAFVFRNIFSKKGMKGKSVSGMNYYACLSLLSLLILTPFAIAVEGPKLWAEGFQKALSQIGPNFIWWLGAQSMFYHLYNQVSYMSLDQISPLTFSVGNTMKRIFVIVSSIIIFHTPIRPVNAIGAAIAILGTFLYSQAKL 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33841197 33843055 - ClG42_01g0228600.10 Clacu01g2286 241670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2286 375 PANTHER SOLUTE CARRIER FAMILY 35 96 374 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Clacu01g2286 375 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 98 374 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Clacu01g2286 375 Pfam Triose-phosphate Transporter family 98 371 IPR004853 -
Clacu01g2286 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 268 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1369 Clacu-Chr1:25023010 Clacu01g2286 Clacu-Chr1:33841197 1.70E-53 dispersed
Clacu01g2286 Clacu-Chr1:33841197 Clacu05g1612 Clacu-Chr5:23291699 1.40E-139 dispersed
Clacu01g2286 Clacu-Chr1:33841197 Clacu09g1956 Clacu-Chr9:34444112 7.10E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2286 K15283 - csv:101216621 637.876