Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2287 ATGTTCGACCCAGATATGTTTGATACTCACCATCATATGCTTGAGGAGTTGGAAAATATGAGAGATGATGATTTCGAGACCAAATCTGGCGCAGAAATCTTAGAACCTGCTTGTGGAACTGACCAACAACGCTCCAAGAAGAAACGTTACAATCGCCATACACAACATCAAATCCAAGAAATGGAAGCATTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAGAGGATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTTAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACATGAGAGACACGAAAACGCAATTTTGAAGGCAGAAAATGAGAAGCTTCTTGCTGAGAACATCCGTTATAGAGAAGCATTCGCCCATTCAACTTGCCCTAACTGCGGCTCTTCCTCCACTGCCCTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGGTCGAAATGCACAAAGCCGTACTATCAGCTTCCGACGAATGCTCCGACGCGATCTCTGGAGTTGGGCATCACAAATTTCGGTGCACAGTCGTCGGGATTCGTGGGAGAGATGTACGGAGCGGCGGACTTTTTGCGGTCGATATCGAGGCCTTCAGAAGGCGAGAAACCGGTGATCGTTGAGCTGGCGGTTTCGGGAATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGCGGAATTGGGGGAAAGCCCATGGGCTTTAGAACTGAGGCTTCAAGAGTTTCGGCTATTGTGTTCATGAACCATATGAAGCTGGTGGATATTTTCATGGATGCTACGCAATGGTCAACCGTGTTCTGCGGCATTGTTTCCAGAGCATCCACTGTGGAAATCCTTTCGCCTGGCCTACCAGGAAACTTCAACGGGGCCTTGCATGTGATGAGCGCTGAATTCCAAGTCCCATCGCCCCTTGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGATGGATTGTGGGCGGTGGCTGATGTTTCCTTAGACACCTTACGCCCTTCTCTCATCCCTAACACCCGAAGAAGACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCAAAGATCACTTGGGTCGAACATGTAGAGGTCGACGAAACTGGCGTCCCCACAATGTACAGACCCCTCGTTAACTCCGGCCTCGCTTTCGGGGCTAAGCGATGGGTCGCGGCCTTGGATCGCCAATCTGAGCGCTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGCGTTATATCGAGCATTGAAGGCAGGAAGAGTATGCTGAAGCTAGCGGAGAGAATGGTGACGAGCTTCTGCGCCGGTGTCGGCGCGTCGAGTGTACACGCTTGGACGGCGTTACCTGCAGCTGCCGGCGATGAGGTTCGTGTTGTGACGAGGAAAAGCACCGACGAACCAGGGAGACCACCCGGCGTTGTACTGAGCGCCGCCACGTCTTTTTGGATCCCTGTTCCACCTAAGGTCGTGTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTAGTTCAGGAAATGGCTCACATAGCCAACGGCCGCCACCCCGGGAATTGTGTCTCCTTGCTTCGTGTCAACAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCGACGGGATCGTACGTTATTTATGCTCCGGTGGACACCGTTGCCATGAACGTGGTGCTAAGCGGTTGCGATCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGAGGCAACAACGGCGACGGAATTCTTGAGCTGGGATCCGGTGGGTCACTCATCACAGTTGCATTTCAAATCCTGGTTGATTCAGTTCCGACGGCTAGACTTTCAATTGGATCAGTGGCCACCGTGAACAGTCTGATCAAATGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGCGAAAACCCATGA 2157 51.83 MFDPDMFDTHHHMLEELENMRDDDFETKSGAEILEPACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLLAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNAPTRSLELGITNFGAQSSGFVGEMYGAADFLRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHMKLVDIFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSDGLWAVADVSLDTLRPSLIPNTRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPTMYRPLVNSGLAFGAKRWVAALDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVPPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGGNNGDGILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33849681 33856314 - ClG42_01g0228700.10 Clacu01g2287 241671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2287 718 ProSiteProfiles START domain profile. 225 459 IPR002913 GO:0008289(InterPro)
Clacu01g2287 718 Gene3D - 36 121 - -
Clacu01g2287 718 SUPERFAMILY Bet v1-like 478 710 - -
Clacu01g2287 718 MobiDBLite consensus disorder prediction 29 54 - -
Clacu01g2287 718 SMART START_1 234 456 IPR002913 GO:0008289(InterPro)
Clacu01g2287 718 CDD START_ArGLABRA2_like 229 455 - -
Clacu01g2287 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 713 IPR042160 -
Clacu01g2287 718 Gene3D - 285 457 IPR023393 -
Clacu01g2287 718 Coils Coil 98 130 - -
Clacu01g2287 718 SMART HOX_1 45 108 IPR001356 GO:0003677(InterPro)
Clacu01g2287 718 CDD homeodomain 46 105 IPR001356 GO:0003677(InterPro)
Clacu01g2287 718 Pfam Homeodomain 47 102 IPR001356 GO:0003677(InterPro)
Clacu01g2287 718 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677(InterPro)
Clacu01g2287 718 FunFam Homeobox-leucine zipper protein HDG1 36 120 - -
Clacu01g2287 718 Pfam START domain 236 455 IPR002913 GO:0008289(InterPro)
Clacu01g2287 718 SUPERFAMILY Bet v1-like 228 457 - -
Clacu01g2287 718 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu01g2287 718 FunFam Homeobox-leucine zipper protein GLABRA 2 234 455 - -
Clacu01g2287 718 SUPERFAMILY Homeodomain-like 36 104 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2287 Clacu-Chr1:33849681 Clacu06g0005 Clacu-Chr6:307312 1.70E-191 dispersed
Clacu01g2287 Clacu-Chr1:33849681 Clacu02g0189 Clacu-Chr2:1769521 1.40E-257 wgd
Clacu01g2287 Clacu-Chr1:33849681 Clacu02g0881 Clacu-Chr2:10808199 6.80E-265 wgd
Clacu01g2287 Clacu-Chr1:33849681 Clacu03g0485 Clacu-Chr3:5170642 3.20E-254 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47106 PF01852 START 8.10E-47 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2287 K09338 - csv:101209093 1359.74