Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2289 ATGGCTACCCATCAGCCACTTCTTCTTCAACCCCCCAAAACTCCCCGATCCAAAACCTTCCCAACAATCCTCTGTTTGGCTGCTCTTTTGTGCTCAGCCATTTTCATTACCAACAAATTCATCAAATCAAACCCATCTAAAAATGATCTACCCTTCCTTCACAACATATGCCACAAGGCATACAACCCATCATCCTGCATTCAAATGGCCGCCTCAGAATCTCCCTTTCCTCAAGAAATCAAAACCACGAACGGGGCTCATTTCTTACATTCTTTCTTGAGGAAATCCATTCCCAAAGTAATTAACACAATCGAGAAAGCCATAGATCTCAGCCAAAGAATCAACAACCCTCGCGGTGAAGCAGCTTTAGCCGATTGTGTCGAGCTTATGGAGATCTCAAACGGCCGACTCATGGACTCTGTTTTGGCTCTGAAGAACAGAACAAGCGGTTCTATCGAAAATGCCCACACATGGCTGAGTAGCGTGCTGACAAACCACATCACGTGCTGGGATGAGATCGAGAATTCAGTATCCAGAGCCGCGGCCATGGATTTAGGACTTGAAGAGTTGATTATGAGAGGGAGAAATTCGTTGGGGATGTTTGTTTCTATTTGGGGATCGGAAATTGGAAATCTGGGGGAGTTGGGGAAAAGGGAAAATGCGTATCCGAGTTGGTTGAAGAAAGGAGATCGGACATTGTTGGGGGTTTCGGGGAGAGAAATGCAAGCGAATATCGTGGTGGCAAAGGATGGGAGTGGGAATTTCAAGACGGTGAAGGAGGCGGTTGAAGCAGTGCCAGATAAGAGCAAGAACAGAGTTGTTATATATGTGAAGAAGGGGATATATAAGGAAAATGTAGAAGTGGGAAAGAAGAAAAAGAATGTAATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAACTCTGCAACTGTAGCTGCGGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGACCGGAAAAGCACCAAGCAGTCGCACTTCGGGTCGGAGCAGATCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACGCACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACCGTCGACTTCATATTCGGTAACGCCGCCGTCGTGTTACAGAACTGTAAAATTGAGCCCCGACGGCCGATGAGCAACCAAGCCAACATGGTGACGGCGCAAGGCCGAATCGACCCAAATCAGAACACTGGAACTTCGATCCAGAAATGCCAAATCGTGGCAAGCTCCGACTTGGAGCCCGTTAAGGGGTCGATTAAGACGTATTTGGGGCGCCCATGGAAGGAGTTTTCGAGGACCGTCGTGATGCAGTCCAGAATTGGCGATCTTATTAATCCAGCAGGCTGGGCCGAGTGGAGTGGGGACTTTGCATTGAAGACGCTCTATTACGGGGAGTATTTAAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATTACGAACCCATCTGAGGCCCAAAAATTCACGGTGGATTCACTTATACAAGGAGGCCAATGGCTGGGCCCCTCAGGCGCGACTTTTATCCCAGGGCTGTGA 1668 48.32 MATHQPLLLQPPKTPRSKTFPTILCLAALLCSAIFITNKFIKSNPSKNDLPFLHNICHKAYNPSSCIQMAASESPFPQEIKTTNGAHFLHSFLRKSIPKVINTIEKAIDLSQRINNPRGEAALADCVELMEISNGRLMDSVLALKNRTSGSIENAHTWLSSVLTNHITCWDEIENSVSRAAAMDLGLEELIMRGRNSLGMFVSIWGSEIGNLGELGKRENAYPSWLKKGDRTLLGVSGREMQANIVVAKDGSGNFKTVKEAVEAVPDKSKNRVVIYVKKGIYKENVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYAHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRIDPNQNTGTSIQKCQIVASSDLEPVKGSIKTYLGRPWKEFSRTVVMQSRIGDLINPAGWAEWSGDFALKTLYYGEYLNNGPGSDVSKRVKWAGYHVITNPSEAQKFTVDSLIQGGQWLGPSGATFIPGL 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33874233 33875988 - ClG42_01g0228900.10 Clacu01g2289 241673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2289 555 SMART PMEI_2 48 200 IPR006501 GO:0004857(InterPro)
Clacu01g2289 555 PANTHER PECTINESTERASE 26 545 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu01g2289 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 176 IPR035513 -
Clacu01g2289 555 CDD PMEI-like_4 57 204 - -
Clacu01g2289 555 NCBIfam pectinesterase inhibitor domain 25 173 IPR006501 GO:0004857(InterPro)
Clacu01g2289 555 Pfam Plant invertase/pectin methylesterase inhibitor 52 176 IPR006501 GO:0004857(InterPro)
Clacu01g2289 555 Gene3D - 238 555 IPR012334 -
Clacu01g2289 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
Clacu01g2289 555 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Clacu01g2289 555 FunFam Pectinesterase 238 555 - -
Clacu01g2289 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
Clacu01g2289 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu01g2289 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2289 Clacu-Chr1:33874233 Clacu09g0555 Clacu-Chr9:4738639 7.20E-121 dispersed
Clacu01g2289 Clacu-Chr1:33874233 Clacu09g0146 Clacu-Chr9:1364958 1.80E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2289 K01051 - csv:101216377 971.074