Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2300 ATGGGAACTCCAGAAAACCTTCTCTTCCTTTGCTTCATCGTCTTATTCATGGTTTCAACCACCGTTTCTCAAATAGAAATCAAAACCCACATATGTTCAAACAGCGGCAACTACACCAGCAACAGCATTTACAAGCAAAATCTCGACACCCTCCTTTCCACCATCGCCTCCAACACCGAAATTGATTACGGGTTTTACAATTTCTCAGCCGGACAGCAACTCGACAAGGTTAACGCCATCGCCCTTTGCCTGGCCGATCTGACGGTGGAGAAATGCAGGAGCTGTCTCCAAAATTCGACTCGAAGGATTCTAGAGGATTGTCCCAACCAGAAGGAGGCTATCGGATGGTACACCGATTGCATGATTCGTTACTCAAATAGATCAATATTTGGCGTTGGGAACGATCAAGTGCTTAGGCCAACTTTTGTTTCCGGTCGGACTGCATCAGACGTAGTTGGGTACACTCAATCGCTAAGCAGTTTGTTGCAAAGACTAAGAAATCAGGCTGCATCTGGGGATTCTAAACACAAATTCGCAGTGGGTGAAATGCCAGCCCCTAATTTGGATACCATATTTGGGTTTCTTCAATGTACTCCCGATTTGTCCTCTGTGGATTGCAATAATTGTCTCATGAAGGCCGCTGAAAATGTTCCAAATGGAAGTACAGGAACGAGGATATTTTCGACCAGCTGCTTTTTGAGATTTGAGACGAACGATCTTTTCTATAACACTCTGTCGCCGCCTCCCACTGCTGGTGGCGCTCCTTCCCCACCCATGTCGCCGCCGCCGCCTCTGCCTCCAACGCCAGAAAATACGGCTAGAACTGTTACTATCGTTGTGGTGTCTATCGTTTCTGTCATCATTGTTCTCCTTGTTGTCATTTTCATCGTTTTGAGGTTGAGGAAGCGAAATAACAGAAAATCAACAGACAAATTTGAAGGTGTTATTGGGGACACCACTAACGAAATTAGCAGTGTGGAGACCATTCAATTTGATTTTGAAACTATTAAAATTGCAACCAGCGATTTTTCAAGTGAAAACAAGCTGGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAAACTAGCTAACGGACAATGTATAGCAGTGAAGAGACTTGCAAATAATTCACAACAAGGAGATTTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAACTTCAACATCGAAACTTGGTTAGGCTGTTGGGATTTTGCTTGCAAAGAACTGAAAGACTTCTCATATATGAGTTCGTACCAAATGCCAGCCTTGACCAATTCATATTTGATTTTGGAAAAAGGACACAATTAGATTGGGAAAGACGATTCAAAATCATAAACGGCATTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATACATCGTGATCTCAAAGCTAGTAATATTTTGTTGGATGAGGAAATGAATCCGAAGATTGCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATGAGACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATTTAATGCATGGCCAATTTTCAGTTAAATCAGATGTCTTCAGTTTTGGTGTTTTAATTCTTGAAATTGTGAGTGGCAAGAAAAATAGTTGCTTTCGCAATGAAGAAAAGATAGAAGATCTCTCCAGCTTTGCATGGAAAAATTGGAAGGATGGAACGACTAATAATGTCATAGATTCAACACTTAATGTTGGTTCTAGTGTTGAAATGTTAAGATGCATTCACATCGGATTATTGTGTGTTCAAGAGAATGCAGCAGATCGTCCAACGATGGCTACGGTGGTTCTAATGCTTAGTAGCATCTCTCTTACTCTTCCAGTACCTTTGGAACCAGCATTCTTTATGCACACTAACATTGATGAATCCAACACACATTCAAAGAGAAATCAGTGGTTGGAAATGAATGAGACGGCTAGTCATTCTGAAAGCATACCTCTTCAATCTTTATCCAATGAAGCTTCAATTAGTGAGCTCAACCCCCGCTAG 2031 41.61 MGTPENLLFLCFIVLFMVSTTVSQIEIKTHICSNSGNYTSNSIYKQNLDTLLSTIASNTEIDYGFYNFSAGQQLDKVNAIALCLADLTVEKCRSCLQNSTRRILEDCPNQKEAIGWYTDCMIRYSNRSIFGVGNDQVLRPTFVSGRTASDVVGYTQSLSSLLQRLRNQAASGDSKHKFAVGEMPAPNLDTIFGFLQCTPDLSSVDCNNCLMKAAENVPNGSTGTRIFSTSCFLRFETNDLFYNTLSPPPTAGGAPSPPMSPPPPLPPTPENTARTVTIVVVSIVSVIIVLLVVIFIVLRLRKRNNRKSTDKFEGVIGDTTNEISSVETIQFDFETIKIATSDFSSENKLGQGGFGAVYKGKLANGQCIAVKRLANNSQQGDFEFKNEVLLVVKLQHRNLVRLLGFCLQRTERLLIYEFVPNASLDQFIFDFGKRTQLDWERRFKIINGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFEVDETQGNTSRIVGTYGYMAPEYLMHGQFSVKSDVFSFGVLILEIVSGKKNSCFRNEEKIEDLSSFAWKNWKDGTTNNVIDSTLNVGSSVEMLRCIHIGLLCVQENAADRPTMATVVLMLSSISLTLPVPLEPAFFMHTNIDESNTHSKRNQWLEMNETASHSESIPLQSLSNEASISELNPR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33930900 33933582 + ClG42_01g0230000.10 Clacu01g2300 241684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2300 676 ProSiteProfiles Gnk2-homologous domain profile. 136 240 IPR002902 -
Clacu01g2300 676 MobiDBLite consensus disorder prediction 250 269 - -
Clacu01g2300 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2300 676 ProSiteProfiles Gnk2-homologous domain profile. 26 129 IPR002902 -
Clacu01g2300 676 SUPERFAMILY Protein kinase-like (PK-like) 322 613 IPR011009 -
Clacu01g2300 676 Gene3D Phosphorylase Kinase; domain 1 317 418 - -
Clacu01g2300 676 MobiDBLite consensus disorder prediction 246 269 - -
Clacu01g2300 676 FunFam Cysteine-rich receptor-like protein kinase 28 419 621 - -
Clacu01g2300 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 137 629 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2300 676 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524(InterPro)
Clacu01g2300 676 Gene3D Transferase(Phosphotransferase) domain 1 419 620 - -
Clacu01g2300 676 ProSiteProfiles Protein kinase domain profile. 343 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2300 676 FunFam Cysteine-rich receptor-like protein kinase 10 302 418 - -
Clacu01g2300 676 CDD STKc_IRAK 349 616 - -
Clacu01g2300 676 SMART serkin_6 343 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2300 676 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 129 - -
Clacu01g2300 676 Pfam Salt stress response/antifungal 32 127 IPR002902 -
Clacu01g2300 676 Pfam Salt stress response/antifungal 152 237 IPR002902 -
Clacu01g2300 676 Gene3D - 24 128 IPR038408 -
Clacu01g2300 676 Gene3D - 138 239 IPR038408 -
Clacu01g2300 676 Pfam Protein tyrosine and serine/threonine kinase 346 610 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2300 676 MobiDBLite consensus disorder prediction 651 676 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2297 Clacu-Chr1:33916205 Clacu01g2300 Clacu-Chr1:33930900 4.30E-08 dispersed
Clacu01g2300 Clacu-Chr1:33930900 Clacu01g2303 Clacu-Chr1:33951181 9.70E-205 dispersed
Clacu01g2299 Clacu-Chr1:33924483 Clacu01g2300 Clacu-Chr1:33930900 6.80E-284 tandem
Clacu01g2300 Clacu-Chr1:33930900 Clacu01g2301 Clacu-Chr1:33934597 3.40E-50 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73282 PF07714 PK_Tyr_Ser-Thr 7.90E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2300 - - - 0.0