Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2303 ATGGGAAGGTTGAGTTTAGAAGCGCTTTTCTTCGTTCTCGCAGCCTCACAATTCATATTTCCCACAACTTCTCAGCCACCCTTCTTATATCGCATCTGTTCCGACAAAGCCAACTACACCGCCGGCAGTCCTTTCAAGAAAAATCTCCACAACGTACTTCTCTCCATCTCTTCCAACACCCAAATCGATTACGGTTTCTACAACGCCACCTCCGGCAAAGTTCCCAACACAGCCACCGCTTTGGCTCTTTGCCGTGGAGGCGCCCCGTTGGAACAATGTAGAAGCTGTGTGTATAACTCAACGCTCAGGATTACTCAAGATTGTCCAAACCAGAGAGAAGCAGAGGGATGGTACCAGGATTGTCAAATTCGTTACTCAAACAACACAATTTACGGCGTCGGAGACAACACTGTACAGATAATCTTCTGGAACTTTGCAAAAGCGGAAGACCCCGACGGGTTTAATGTGGCAGTGAGGAATTTGTTCGATCGGCTGCGAGTGGAGGCTGCGTCGGGGAGTTCTATTAAGAAATCGGCTTGGGGAGGAGAGAAGATTCCAAGTCCGAGCATGGATACTGTATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGATTGTTTAAGCTGCCTCAATCAGCTTCAAACAACTCTTCCTAATTGTTGTAATGCGAGCATAGGGGTGAGATTAATTGCAACTAGTTGTCAACTCAATTACGAGCTCCACCCCATTTATCCTCCGCTTTCGTCTCCGCCTCCACCTCCGCCTCCTCCGCCTCTGTCTCCTCATTCTCCTCCTCCTCCGCCCTCACCCTTGTCATCTTCGCCTTCAAAACCTGGAAATAACGGCAATATTGGTAGAACTAGAACTGTTATAATCATTGTGGTGACCATCGTTTCTGCTGTCATTCTTCTTGGCATTTTTGTTATTTTGATATTGAGGAAGCAAAATCACAAAACATCATTAGACAATTCCGAAGATTTGTCTTTCGGAGACACCACGGTTGAAATTAGCAGTGTGGAGATGATTCAATTTGATTTTGATAGCGTTAAAGCTGCAACAAATGACTTTGCAAGTGAAAACAAGCTCGGACAAGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACGACTAATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGCCTTGACCACTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGGAGACACGTTTCAAAATCATAAATGGCATTGCGAGAGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATTATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACAGAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATCAAACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGATATATGGCTCCAGAGTATGTAATGCATGGACACTTCTCAGTAAAATCAGATGTCTTTAGCTTTGGCATATTAGTCCTTGAGATTTTGAGTGGCAAAAAAAACACTAATTTTCACAATGGAGAACACTTAGAAAATCTCTCAAGCTTTGCATGGACAAATTGGAGGGAAGGAACAATTGAAAATGTCATAGATTCAACCCTTAGCGTTGGGTCAAGAACTGAGATGGTAAGATGCATCCATATTGGACTATTGTGTGTTCAAGAAGATGTAACAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAGTAGTTCTTCTATCACCCTTACTATACCCTCTAAACCAGCATTCTTCTTGCATAGTACTACAAATAGATCTAACGTATTATCAAGTTCAGACGGAACTAATTGTGAAAGTGTTTCTGATCAACCTTCGAAGAATAACATTTCAATTACAGAGATACATCCTCGTTAG 2052 41.52 MGRLSLEALFFVLAASQFIFPTTSQPPFLYRICSDKANYTAGSPFKKNLHNVLLSISSNTQIDYGFYNATSGKVPNTATALALCRGGAPLEQCRSCVYNSTLRITQDCPNQREAEGWYQDCQIRYSNNTIYGVGDNTVQIIFWNFAKAEDPDGFNVAVRNLFDRLRVEAASGSSIKKSAWGGEKIPSPSMDTVYGLVDCFPDLSYLDCLSCLNQLQTTLPNCCNASIGVRLIATSCQLNYELHPIYPPLSSPPPPPPPPPLSPHSPPPPPSPLSSSPSKPGNNGNIGRTRTVIIIVVTIVSAVILLGIFVILILRKQNHKTSLDNSEDLSFGDTTVEISSVEMIQFDFDSVKAATNDFASENKLGQGGFGAVYKGKLPNGRLIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDHFIFDFAKRSLLDWETRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTEMNSKISDFGMARLFEVDQTQGNTSRIVGTYGYMAPEYVMHGHFSVKSDVFSFGILVLEILSGKKNTNFHNGEHLENLSSFAWTNWREGTIENVIDSTLSVGSRTEMVRCIHIGLLCVQEDVTNRPTMTSVVMMLSSSSITLTIPSKPAFFLHSTTNRSNVLSSSDGTNCESVSDQPSKNNISITEIHPR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33951181 33954097 + ClG42_01g0230300.10 Clacu01g2303 241687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2303 683 MobiDBLite consensus disorder prediction 249 276 - -
Clacu01g2303 683 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 130 - -
Clacu01g2303 683 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 108 644 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2303 683 SUPERFAMILY Protein kinase-like (PK-like) 338 628 IPR011009 -
Clacu01g2303 683 MobiDBLite consensus disorder prediction 249 284 - -
Clacu01g2303 683 ProSiteProfiles Gnk2-homologous domain profile. 136 245 IPR002902 -
Clacu01g2303 683 ProSiteProfiles Protein kinase domain profile. 358 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2303 683 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Clacu01g2303 683 Gene3D Phosphorylase Kinase; domain 1 320 433 - -
Clacu01g2303 683 Gene3D Transferase(Phosphotransferase) domain 1 434 636 - -
Clacu01g2303 683 MobiDBLite consensus disorder prediction 655 683 - -
Clacu01g2303 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2303 683 Gene3D - 26 129 IPR038408 -
Clacu01g2303 683 Gene3D - 135 244 IPR038408 -
Clacu01g2303 683 FunFam Cysteine-rich receptor-like protein kinase 10 315 433 - -
Clacu01g2303 683 FunFam Cysteine-rich receptor-like protein kinase 28 434 636 - -
Clacu01g2303 683 Pfam Protein tyrosine and serine/threonine kinase 361 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2303 683 CDD STKc_IRAK 364 622 - -
Clacu01g2303 683 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524(InterPro)
Clacu01g2303 683 SMART serkin_6 358 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2303 683 Pfam Salt stress response/antifungal 150 242 IPR002902 -
Clacu01g2303 683 Pfam Salt stress response/antifungal 33 127 IPR002902 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2100 Clacu-Chr1:32702438 Clacu01g2303 Clacu-Chr1:33951181 6.20E-207 dispersed
Clacu01g2299 Clacu-Chr1:33924483 Clacu01g2303 Clacu-Chr1:33951181 6.30E-205 dispersed
Clacu01g2300 Clacu-Chr1:33930900 Clacu01g2303 Clacu-Chr1:33951181 9.70E-205 dispersed
Clacu01g2301 Clacu-Chr1:33934597 Clacu01g2303 Clacu-Chr1:33951181 4.20E-72 dispersed
Clacu01g2303 Clacu-Chr1:33951181 Clacu03g0502 Clacu-Chr3:5288152 3.40E-149 dispersed
Clacu01g2302 Clacu-Chr1:33942513 Clacu01g2303 Clacu-Chr1:33951181 6.00E-164 tandem
Clacu01g2303 Clacu-Chr1:33951181 Clacu01g2304 Clacu-Chr1:33956294 1.70E-273 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73284 PF07714 PK_Tyr_Ser-Thr 1.20E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2303 - - - 0.0