Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2304 ATGAGTTCCGAAACGCCTTTCTTCCTGCCTTTCTTCATTCTCGCAGTCCCACACTTAATATTTCCCACAACTTCTCAGCCACCCTTTTTATACTACACCTGCTCTTCCAATGCCAATTACACCATATACAGCCCTTTCAACATAAACCTGGACAACGTACTTCGCTCCATTTCTTCCAACACCCAAGTCGATTACGGCTTCTACAACGCCACTTCCGGCCAAGATCCCGACCGAGCCACCGCTTTGGCTCTTTGCCGTGGTGGTGTTTCATTGGAACAATGTAGAAGCTGTGTGAACAACTCAGCGCTCAGGATTACTCAAGATTGTCCAAACCAGAAAGAGGCAGAGGGATGGTACCAGGATTGTCAAATTCGTTACTCAAACAACTCTATTTACGGCGTTCTCGGAGACAGCACTACGCAGATATTCTTGTGGAACACTCAAATAGCGGAAGACCCAGATGGGTTCAATGAGGCATTGAGGAGTTTGTTGGATCGGCTGCGAATTGAGGCTGCGTCGGGGAGTTCTATTCGAAAGTCTGCTTGGGGAGAAAAGAGGGTTCGGAGTCCAAGCATGGATACCATATATGGATTGGTTGATTGTTTTCCTGATTTGTCTTACTTGGACTGTTTTAACTGCCTCGATCTGCTTCAAAATTCTCTTCCTAGTTGTTGCAACGCCAGCATAGGAGCCAGATTACTTGCAGTTAGTTGTGAACTCAATTATGAGATCCACCCCATCTATGCCTCACTTTTGTCTCCACCGCCGCCTCCTCCACCCACTCTGTCTTCTCCTTCGCCTCCGGCTCCGGCATCACCCCTGCCGTCTTTGCCTCCGAAACCTGGAAATAGTGGCAGTACTGATAGAAGTATAAGTAGAAGTGGAAGTGTTGTAATCGTTATGGTGGCCATCGTTTCTGCTGTCATTCTTCTTCTTGCCATTTTCATCATTTTGATATTGAGGAAGCGAAAGCACAAAAGACCATTAGGTGTATCTCTGGAAGACACCATCGATGAAATTAGCAGTGTGGAGATGATTCAATTTGATTTTGATAGCATTAAAATCGCAACAAATGACTTTGCAAGTGAAAACAAGCTCGGACAGGGTGGATTTGGAGCTGTTTATAAGGGTAAGCTACCTAATGGACGACTAATAGCTGTGAAGAGGCTTGCGAATAATTCACAACAAGGGGATGTTGAATTCAAAAATGAAGTCCTTTTGGTGGTCAAGCTTCAACATCGTAACTTGGTTAGGCTACTTGGGTTCTGCTTGCAAAGAAGCGAAAGACTTCTCATATATGAGTTTGTACAAAATGGCAGCCTTGACCACTTTATATTTGATTTTGCAAAGCGGTCACTATTAGATTGGGAGACACGTTTCAAAATCATAAATGGCATTGCGAGAGGACTTCTTTACCTTCATGAAGATTCTCGTCATCGAATCATACATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATACGAAAATGAATTCAAAGATTTCAGATTTTGGTATGGCAAGATTGTTTGAAGTAGATCAAACTCAAGGCAATACAAGTAGAATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATGTAAAGCGTGGACAATTCTCAATAAAATCAGATGTTTTTAGTTTTGGTGTCTTGGTTCTTGAGATTTTGAGTGGTCAAAGAAATAATAATTTTTACAATGGAGAACACTCCAAAAATCTCTTAAGCTTTGCATGGACAAATTGGAGGGCAGGAACAACTACAAATGTCATAGATTCCAGCCTTAGTATTGGTTCAAGGATCGAGATGATAAGATGCATTCATATTGGACTATTGTGTGTTCAAGAAAGTATAACAAATCGACCAACAATGACTTCAGTAGTTATGATGCTAAGTAGTTCTTCTTTCACTCTTCCTATACCCTCTAAACCAGGATTCTTCCTGCATAGTCTTACCAACAAATCGAACAAACTCTTAAAGTTAGATGGAAATAGTTGTGAAAGAGAATTTTCAAATGGACTGGATCCGATGACCGAGTCCGTGGACTTGAACAAAGGCAACTACACCGACAACAGCCCTTTCAACAAAAATCTCGACAACGTTCTTGCTTCACTCTCCTCCAATTCCAACACCGACAGCCGCCGGGTCGACTACGGTTTCTATAATGCCACCGCCGGTGAAGATCCCGACACAGCCAACGCTAAGAAGGAAGGTGCAGGATGGTACCACCATTGCCAGATTCTTTACTCAAACAACTCTGTTCACGATGAGACAGATTTTTCCGTGACTCAAATTTATTACAACACCGGTGCAGCCCCAGACAAGAACAGTTTCAATGAGGAACTGAGAGAGTTAATGGATCGACTGCGAGAGGAGGCTGCATCAGGGACTTCGATTCGAAAGTCTGCAGGCGGAGATGTGAAGCTTAAAAGTCCGAATACGTATACAATATATGGGCTTGTTGATTGTTTTCCCGACATGTCGTACTTCGATTGTGATGTCTGCCTCAATCGGCTTCAAAGTAATCTTCCTTCTTGTTGTAGTGGCAGCATAGGAGCAAGACTGCTTGCAGCTAGTTGTCAAATTAATTATGAAATTCACCCTCTGTATGAATCACTTCTCTCTCCACCTTTGCCGCCTCCGCCGACATCACCATCAGCTCCTAATCTCGCCCCTCCATCTTCTCCGTCAGCACATGGAAATAATGGCAATACTGCTAGAACTGTTATAATTGTCGTGGTATCCATCGTTTCAGCCAATATTTTCTTTGTTGGCGTTTGCTTGATTATGAGATTTAGAAACAGAAAGCAAAAAAGACCATTAAGAAAATTTGAAAATGTTGCTATTGGAGATGCCAGTGATGAAATTAGCAGTACAGAGACAATTCATTTTGATTTTGATGTCGTTAAGGATGCAACTAATGACTTCTCAAGTGAAAACAAGCTAGGACAAGGTGGATTTGGAGCTGTTTACAAGGGTAAGCTACCTAATGGACAACATATTGCAGTGAAGAGGCTTGCACATAATTCACAACAAGGAGATGTTGAATTCAAAAATGAAGTACTTTTGGTAGTCAAGCTTCAGCATCGAAACTTGGTTAGCCTATTGGGATTCTGCTTGCAAGGAAGCGAAAGACTTCTCATATATGAATTTGTACCAAATGGTAGCCTTGACCATTTCATATTTGATCTTGGGAAGCGGATACAATTAGATTGGGAAAAACGATATAAAATCATAAATGGCACTGCACGAGGACTTCTTTACCTTCATGAAGATTCTCGCCTTCGAATCATTCATCGTGATCTTAAAGCTAGCAATATTTTGTTGGATGAAGAAATGAATCCAAAGATCGCCGATTTTGGTTTAGCAAGATTGTTCGAAGTAGATGAGACTCAAGGCAATACAAGTAGGATTGTGGGAACTTATGGCTATATGGCTCCAGAGTATATAGTACATGGACAATTTTCGGTAAAATCAGATGTCTTTAGCTTTGGTGTTTTGGTTCTTGAAATTGTGAGTGGCCAAAAAAACAATTGTTTTCGCAATGGAGAAAATATTGGAGATCTTACCAGCTTTACTTGGAATAATTGGAGGGCTAGAGCAACCACAAATGTCATAGCTTCAACACTTGGTGTTGGCTCAAGGATTGAAATGATAAGATGCATTCACATTGGACTATTGTGTGTTCAAGAAAATGTAGCAAACCGACCAACAATGGCTTCGGTGGTTATGATGTTAAGTAGTTCTTCTTTCACTCTCCCTATACCCTCTAAACCTGCATTCTTCATGCATAGCATCACCAATGGATCCAACACAATGTTAGCATCAAATGAGACTAATCATTCTAAAAGCACATCTCTTCAACATTCAGAAAGTGCCGACGTTTCAATTACAGAACTTCACCCTCGTTAA 3909 41.49 MSSETPFFLPFFILAVPHLIFPTTSQPPFLYYTCSSNANYTIYSPFNINLDNVLRSISSNTQVDYGFYNATSGQDPDRATALALCRGGVSLEQCRSCVNNSALRITQDCPNQKEAEGWYQDCQIRYSNNSIYGVLGDSTTQIFLWNTQIAEDPDGFNEALRSLLDRLRIEAASGSSIRKSAWGEKRVRSPSMDTIYGLVDCFPDLSYLDCFNCLDLLQNSLPSCCNASIGARLLAVSCELNYEIHPIYASLLSPPPPPPPTLSSPSPPAPASPLPSLPPKPGNSGSTDRSISRSGSVVIVMVAIVSAVILLLAIFIILILRKRKHKRPLGVSLEDTIDEISSVEMIQFDFDSIKIATNDFASENKLGQGGFGAVYKGKLPNGRLIAVKRLANNSQQGDVEFKNEVLLVVKLQHRNLVRLLGFCLQRSERLLIYEFVQNGSLDHFIFDFAKRSLLDWETRFKIINGIARGLLYLHEDSRHRIIHRDLKASNILLDTKMNSKISDFGMARLFEVDQTQGNTSRIVGTYGYMAPEYVKRGQFSIKSDVFSFGVLVLEILSGQRNNNFYNGEHSKNLLSFAWTNWRAGTTTNVIDSSLSIGSRIEMIRCIHIGLLCVQESITNRPTMTSVVMMLSSSSFTLPIPSKPGFFLHSLTNKSNKLLKLDGNSCEREFSNGLDPMTESVDLNKGNYTDNSPFNKNLDNVLASLSSNSNTDSRRVDYGFYNATAGEDPDTANAKKEGAGWYHHCQILYSNNSVHDETDFSVTQIYYNTGAAPDKNSFNEELRELMDRLREEAASGTSIRKSAGGDVKLKSPNTYTIYGLVDCFPDMSYFDCDVCLNRLQSNLPSCCSGSIGARLLAASCQINYEIHPLYESLLSPPLPPPPTSPSAPNLAPPSSPSAHGNNGNTARTVIIVVVSIVSANIFFVGVCLIMRFRNRKQKRPLRKFENVAIGDASDEISSTETIHFDFDVVKDATNDFSSENKLGQGGFGAVYKGKLPNGQHIAVKRLAHNSQQGDVEFKNEVLLVVKLQHRNLVSLLGFCLQGSERLLIYEFVPNGSLDHFIFDLGKRIQLDWEKRYKIINGTARGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGLARLFEVDETQGNTSRIVGTYGYMAPEYIVHGQFSVKSDVFSFGVLVLEIVSGQKNNCFRNGENIGDLTSFTWNNWRARATTNVIASTLGVGSRIEMIRCIHIGLLCVQENVANRPTMASVVMMLSSSSFTLPIPSKPAFFMHSITNGSNTMLASNETNHSKSTSLQHSESADVSITELHPR 1302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33956294 33964776 + ClG42_01g0230400.10 Clacu01g2304 241688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2304 1302 CDD STKc_IRAK 981 1238 - -
Clacu01g2304 1302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 MobiDBLite consensus disorder prediction 876 899 - -
Clacu01g2304 1302 FunFam Cysteine-rich receptor-like protein kinase 10 321 435 - -
Clacu01g2304 1302 FunFam Cysteine-rich receptor-like protein kinase 28 1051 1253 - -
Clacu01g2304 1302 Gene3D Transferase(Phosphotransferase) domain 1 1051 1251 - -
Clacu01g2304 1302 Gene3D Transferase(Phosphotransferase) domain 1 436 636 - -
Clacu01g2304 1302 CDD STKc_IRAK 366 624 - -
Clacu01g2304 1302 ProSiteProfiles Protein kinase domain profile. 360 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 SMART serkin_6 360 611 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 SMART serkin_6 975 1250 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 ProSiteProfiles Gnk2-homologous domain profile. 759 868 IPR002902 -
Clacu01g2304 1302 MobiDBLite consensus disorder prediction 1272 1302 - -
Clacu01g2304 1302 MobiDBLite consensus disorder prediction 256 289 - -
Clacu01g2304 1302 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 131 - -
Clacu01g2304 1302 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524(InterPro)
Clacu01g2304 1302 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Clacu01g2304 1302 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 95 646 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2304 1302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Clacu01g2304 1302 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Clacu01g2304 1302 Pfam Salt stress response/antifungal 771 864 IPR002902 -
Clacu01g2304 1302 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Clacu01g2304 1302 MobiDBLite consensus disorder prediction 256 280 - -
Clacu01g2304 1302 SUPERFAMILY Protein kinase-like (PK-like) 340 630 IPR011009 -
Clacu01g2304 1302 Coils Coil 774 794 - -
Clacu01g2304 1302 SUPERFAMILY Protein kinase-like (PK-like) 963 1283 IPR011009 -
Clacu01g2304 1302 ProSiteProfiles Protein kinase domain profile. 975 1251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 FunFam Cysteine-rich receptor-like protein kinase 28 436 638 - -
Clacu01g2304 1302 Gene3D - 138 246 IPR038408 -
Clacu01g2304 1302 Gene3D - 27 130 IPR038408 -
Clacu01g2304 1302 Gene3D - 758 867 IPR038408 -
Clacu01g2304 1302 MobiDBLite consensus disorder prediction 876 891 - -
Clacu01g2304 1302 Gene3D Phosphorylase Kinase; domain 1 941 1050 - -
Clacu01g2304 1302 Gene3D Phosphorylase Kinase; domain 1 329 435 - -
Clacu01g2304 1302 Pfam Protein tyrosine and serine/threonine kinase 978 1243 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 Pfam Protein tyrosine and serine/threonine kinase 363 627 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2304 1302 FunFam Cysteine-rich receptor-like protein kinase 10 936 1050 - -
Clacu01g2304 1302 ProSitePatterns Protein kinases ATP-binding region signature. 981 1003 IPR017441 GO:0005524(InterPro)
Clacu01g2304 1302 MobiDBLite consensus disorder prediction 1272 1294 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2302 Clacu-Chr1:33942513 Clacu01g2304 Clacu-Chr1:33956294 1.90E-165 dispersed
Clacu01g2304 Clacu-Chr1:33956294 Clacu03g0502 Clacu-Chr3:5288152 1.60E-155 dispersed
Clacu01g2303 Clacu-Chr1:33951181 Clacu01g2304 Clacu-Chr1:33956294 1.70E-273 tandem
Clacu01g2304 Clacu-Chr1:33956294 Clacu01g2305 Clacu-Chr1:33967933 1.10E-199 tandem
Clacu01g2100 Clacu-Chr1:32702438 Clacu01g2304 Clacu-Chr1:33956294 2.00E-205 transposed
Clacu06g0806 Clacu-Chr6:9718054 Clacu01g2304 Clacu-Chr1:33956294 1.10E-69 transposed
Clacu01g2304 Clacu-Chr1:33956294 Clacu02g0177 Clacu-Chr2:1676785 2.40E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73285 PF07714 PK_Tyr_Ser-Thr 3.50E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2304 - - - 0.0