Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2306 ATGTTCTGTTTCCTCGATTACAGATCTTTGCCAATTTTGTTGCTACTTCTAATTTCAATCCTTGGGCTCAGCCGCTCCCATCATTTTGAACCAAAATATAGGTTCCACATCTGTTCAGCGCCAAGTGATAACACAACCAATTCTAATCAGGGTTCGGACCTCAATGGCCTGCTGAGTTCCCTATCAGAAGCTTCGTCTGACAGCTTCTACAACAGAACTTTCAATGGAATATACGGCCTCGTCCTTTGCCGAGGCGATATTAACAGCGATAACTGTCACAGTTGTGTCAGTGCTGCAAGCAAAGAATTAAGGGATCAATGCCCTTTAAGAGTTAACGCCACAATATGGTACGATGAGTGTATGCTGAGATACTCAGACAAGAACTTCTTGGGGACTGTAGAGATATTGCCGAGATTCCTTATGGGCGATTCTGGGAACCAGACATCACCAGATGATCGGAACATTGACGGGCCTGATCTATTGTCTCAGATGGCCAGTGAAGCTGCAGAGCTAGAGATGATGTTCAAGGCAAACAAGTTGGATAACCGTGGGACACGCTATGGATTGGTTCAGTGCACAAGGGATCTCAACAGTAGCGAGTGTTTTACATGTTTGACGGCTCTGCTGGAGGAGATCAAGCAGGTTTACAAAGGGAGAGTGGGGTGGAGAATTTTGGGCCCAAGTTGTAGCATAACGTATGAGCAATATCTTTTCTATCAGCTACCAGCTTCGTGTCAAGGATTAAGCGCGAAAATGATTGTAGCAATCACTATATCAACAGTTGCAGCAGTAGCAATTCTTGCAAGTCTATCGTATTGTTTACTTTTGTCAAAGAAGAGACGACAGGAGATGGACACAGGCGAACAAGTTCTGTTGCGAAATTTGGGAGATGCGAAGTCCGCAGAATTGATGAAGCAAGATTTGCATTCACGAGATAGAGACAATGATGAAGAAATGCATTACTTCAGTTTCACCACTCTACAGGCTGCCACAAACAACTTTGCAGATGCAAATAGGCTTGGAGAAGGTGGTTTTGGTCCGGTTTTCAAGGGAAAGTTGATGAATGGGGAAGAAATAGCTGTAAAAAGACTGTCGGTTAAGTCGAGTCAAGGTCACGATGAGTTCAAGAATGAAGTCATGGTCATAATGAAGCTTCAACATAAAAATCTAGTCAGACTTCTGGGATGCTGTCTGGAGGGAGAGGAAAAGCTCCTTGTCTATGAGTACATGGCAAACACTAGTCTAGATGCCTTCCTATTTGATCCAGTTAAATGCAAACAACTCGACTGGCTTAAGCGCAACAACATCATCAATGGAGTTGCAAAAGGAATTCTATATCTACACGAAGACTCTCGGCTCAAAATTATTCATAGGGATTTAAAAGCTAGCAATGTTTTGTTGGATGATGAGATGAAGGCAAAGATATCAGACTTTGGAACGGCCAGAATTTTTGGAGGCAAACAAGTTGAGGCTAGCACCAACAGAGTTGTTGGCACTTTTGGATATATGGCACCAGAATATGCAATGGAGGGAGTGTTTTCAATAAAGTCTGATGTTTACAGTTTTGGGATTTTAATGTTAGAAGTGATAAGCGGAAGAAAGAACAGCGGTTTCTTCAAAGTAGACAATGCACAGAGCCTTCTATCACAGGCATGGCAACTATGGAAGGAAGGGAGAGAAGAGGAAATGGTTGATCCGAACCTGGTTGGAGAATGTTCTTTAAGCGAAGCTCTGAGATGGATCCAAATTGGTCTGCTGTGTGTACAAGAAGACCCTAACATCAGACCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCAAATCGATTCACCTTCCCCAACCGTCGAAACCTCCATTCTTTCCGATTGGATTTCCGATGTCCGCCGATCAATCTTCAATGACTTTACTGGGAACGGGATATCTCTCCACTCAATCGTCTACCACTGCTTCTATCTAG 1959 43.39 MFCFLDYRSLPILLLLLISILGLSRSHHFEPKYRFHICSAPSDNTTNSNQGSDLNGLLSSLSEASSDSFYNRTFNGIYGLVLCRGDINSDNCHSCVSAASKELRDQCPLRVNATIWYDECMLRYSDKNFLGTVEILPRFLMGDSGNQTSPDDRNIDGPDLLSQMASEAAELEMMFKANKLDNRGTRYGLVQCTRDLNSSECFTCLTALLEEIKQVYKGRVGWRILGPSCSITYEQYLFYQLPASCQGLSAKMIVAITISTVAAVAILASLSYCLLLSKKRRQEMDTGEQVLLRNLGDAKSAELMKQDLHSRDRDNDEEMHYFSFTTLQAATNNFADANRLGEGGFGPVFKGKLMNGEEIAVKRLSVKSSQGHDEFKNEVMVIMKLQHKNLVRLLGCCLEGEEKLLVYEYMANTSLDAFLFDPVKCKQLDWLKRNNIINGVAKGILYLHEDSRLKIIHRDLKASNVLLDDEMKAKISDFGTARIFGGKQVEASTNRVVGTFGYMAPEYAMEGVFSIKSDVYSFGILMLEVISGRKNSGFFKVDNAQSLLSQAWQLWKEGREEEMVDPNLVGECSLSEALRWIQIGLLCVQEDPNIRPTMSMVVLMLGSKSIHLPQPSKPPFFPIGFPMSADQSSMTLLGTGYLSTQSSTTASI 652
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 33971999 33975012 - ClG42_01g0230600.10 Clacu01g2306 241690
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2306 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2306 652 CDD STKc_IRAK 340 605 - -
Clacu01g2306 652 ProSiteProfiles Gnk2-homologous domain profile. 32 129 IPR002902 -
Clacu01g2306 652 Gene3D Phosphorylase Kinase; domain 1 308 409 - -
Clacu01g2306 652 ProSiteProfiles Protein kinase domain profile. 334 621 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2306 652 Gene3D - 140 238 IPR038408 -
Clacu01g2306 652 Gene3D - 31 129 IPR038408 -
Clacu01g2306 652 ProSiteProfiles Gnk2-homologous domain profile. 135 238 IPR002902 -
Clacu01g2306 652 Gene3D Transferase(Phosphotransferase) domain 1 410 612 - -
Clacu01g2306 652 SMART serkin_6 334 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2306 652 Pfam Salt stress response/antifungal 38 126 IPR002902 -
Clacu01g2306 652 Pfam Salt stress response/antifungal 159 236 IPR002902 -
Clacu01g2306 652 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 154 621 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2306 652 Pfam Protein tyrosine and serine/threonine kinase 338 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2306 652 SUPERFAMILY Protein kinase-like (PK-like) 316 632 IPR011009 -
Clacu01g2306 652 FunFam Uncharacterized protein 410 611 - -
Clacu01g2306 652 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 298 409 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2306 Clacu-Chr1:33971999 Clacu03g0498 Clacu-Chr3:5267319 1.60E-132 dispersed
Clacu01g2305 Clacu-Chr1:33967933 Clacu01g2306 Clacu-Chr1:33971999 1.20E-68 tandem
Clacu01g2306 Clacu-Chr1:33971999 Clacu01g2307 Clacu-Chr1:33978162 7.70E-199 tandem
Clacu01g2306 Clacu-Chr1:33971999 Clacu02g0175 Clacu-Chr2:1661600 9.60E-23 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73287 PF07714 PK_Tyr_Ser-Thr 1.30E-47 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2306 - - - 0.0