Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2307 ATGATTGATTTCCTCATTCAAACACCTTCTCCCTTGCCTTTAACTTTACTGCTTCTGATTTCAATATCTGGATTCATAGTCCCTTGTTGTACCCAACGTTATTTATACTGCTCAGGATCCAACACGGCTCACCCCAATCTAAATTCTGACATTCATTTCCTATTGAATTCCTTGGTCTCTCGAGCTTCTTCTCGCACTTTCTACACTGAGACCTCTAATGGAATTCATGGCCTCTTCCTCTGCCGAGGGGATCTTCCCAACGAGGCCTGTTGTACCTGCGTCGAAGGAGCTAGTCAACAAATCAAGGTCGACTGCGCATCACAAACAAACGGTACCATAGGCTTTGATGAATGCATGTTGAGATACTCAGCTGTGAACTTCTTTGGAGTCCTGGAGACAGCTCCAAGAACACTGCTATATAACAGTCTGAACCAATCTACTTTTGAAGATCATGATTTCGTCGATCTTGCATTGGTGTCTAATTTAGTAAGAGATGCTACAAATGCAGATTTGATGTTCAAGGAAGGTGAGGTAAATGTGCAGGGGGTGGATCAGAGATTTGGATTTGCACAGTGTACAAGAGATATCATCAAGCGTGATTGTGAGTTCTGTTTGACAATTTTGGTGGATTACGCAAAGGGATGTTGCCTAAGGCAAAGAGGATGGCGAGTTTTAGCCCCCAATTGTAATTTAAGAGTTGAGGCCTTTCGTTTTTATGGAATACCAGGACCTCCATCTTTGCCACTTGATGAAGAAGGAGGGAACAGAACAAGGATCATAGTCATCAGCATATCAACAGTTGCAGCAGCGGCAATTCTGCTAGGCCTATTGTATGGCTCATTTTTATGGAGAAACAAAAGACAGGAGAGGGATAGAAGTGAAGAGCTTCCTTTGCGAAATCGGGCAGATCCCTCACTGAGGCAAAATTTTGATGCAACAAATCACGACAATGATGGAGATATGCATTACTTCAACTTTAGTACTCTAAAGGCTGCTACAGATGACTTTTCAGATGTTCATAAACTTGGAGAAGGGGGGTTTGGTCCAGTTTACAAGGGAAAGCTGATGGGTGGTGAGGAAGTAGCAGTTAAAAGACTATCAACAAAATCAAGTCAAGGACATGAAGAGTTCAAGAATGAAGCAAAGGTCATTTGGAAGCTTCAACATAAGAATCTGGTCAGGCTCTTGGGATGTTGTGTTGAAGGAGAAGAAAAGCTTTTAGTCTATGAGTACATGGTAAATACTAGTCTTGATGCTTTCTTGTTTGATCCATTGAAGTGCAAACAACTTGACTGGCTCAAGCGTGAAAACATTGTCAATGGGATTGCAAGAGGAATTCTCTACCTCCATGAAGATTCTCGACTCAAAATCATCCATAGAGATTTGAAAGCGAGCAATGTACTGTTAGATGAGGAGATGAATCCAAAAATATCAGACTTTGGAACTGCTAGGATATTTGGAGGCAAGCAAATTGATGCCAGCACCAATAGAATAGTAGGAACATATGGTTATATGGCACCAGAGTATGCTATGGAGGGAGTTTTCTCAGTTAAATCCGATGTATACAGTTTTGGAGTTCTTATGCTAGAAGTGATGAGTGGGAGAAAAAACATTGGCTTTCTGAACATGGACAGAACCGCAGAACCTTCTGTCATATGTAGAGCAGAAGAAATGATAGACAAGAACTTGGCTGGAGATTGTCCTGAGAGTGAGGCTGTAAAATGGATCCACATAGGGTTGTTGTGTGTGCAAGAAGATCCTGACATCAGGCCCACCATGTCAATGGTTGTTCTAATGCTTGGAAGCCAATCGATTCACCTTCCTCAGCCATCAAAACCTCCATTTCTTACAGCTAGAGGGTCTCTAAGTAGATATCAATATTCAACAACTGAAACAGGGACAAGGTTACACACCACAGATCAGTCGTCTACTACTGCTTCTATCTAG 1947 41.96 MIDFLIQTPSPLPLTLLLLISISGFIVPCCTQRYLYCSGSNTAHPNLNSDIHFLLNSLVSRASSRTFYTETSNGIHGLFLCRGDLPNEACCTCVEGASQQIKVDCASQTNGTIGFDECMLRYSAVNFFGVLETAPRTLLYNSLNQSTFEDHDFVDLALVSNLVRDATNADLMFKEGEVNVQGVDQRFGFAQCTRDIIKRDCEFCLTILVDYAKGCCLRQRGWRVLAPNCNLRVEAFRFYGIPGPPSLPLDEEGGNRTRIIVISISTVAAAAILLGLLYGSFLWRNKRQERDRSEELPLRNRADPSLRQNFDATNHDNDGDMHYFNFSTLKAATDDFSDVHKLGEGGFGPVYKGKLMGGEEVAVKRLSTKSSQGHEEFKNEAKVIWKLQHKNLVRLLGCCVEGEEKLLVYEYMVNTSLDAFLFDPLKCKQLDWLKRENIVNGIARGILYLHEDSRLKIIHRDLKASNVLLDEEMNPKISDFGTARIFGGKQIDASTNRIVGTYGYMAPEYAMEGVFSVKSDVYSFGVLMLEVMSGRKNIGFLNMDRTAEPSVICRAEEMIDKNLAGDCPESEAVKWIHIGLLCVQEDPDIRPTMSMVVLMLGSQSIHLPQPSKPPFLTARGSLSRYQYSTTETGTRLHTTDQSSTTASI 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33978162 33980970 - ClG42_01g0230700.10 Clacu01g2307 241691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2307 648 Gene3D Transferase(Phosphotransferase) domain 1 412 608 - -
Clacu01g2307 648 Pfam Salt stress response/antifungal 157 234 IPR002902 -
Clacu01g2307 648 Pfam Salt stress response/antifungal 40 123 IPR002902 -
Clacu01g2307 648 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Clacu01g2307 648 Gene3D Phosphorylase Kinase; domain 1 310 411 - -
Clacu01g2307 648 ProSiteProfiles Gnk2-homologous domain profile. 29 127 IPR002902 -
Clacu01g2307 648 SUPERFAMILY Protein kinase-like (PK-like) 321 634 IPR011009 -
Clacu01g2307 648 Pfam Protein tyrosine and serine/threonine kinase 340 597 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2307 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2307 648 Gene3D - 30 127 IPR038408 -
Clacu01g2307 648 Gene3D - 137 238 IPR038408 -
Clacu01g2307 648 FunFam Liguleless narrow1 412 608 - -
Clacu01g2307 648 MobiDBLite consensus disorder prediction 628 648 - -
Clacu01g2307 648 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 147 615 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2307 648 SMART serkin_6 336 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2307 648 ProSiteProfiles Protein kinase domain profile. 336 616 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2307 648 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 301 411 - -
Clacu01g2307 648 CDD STKc_IRAK 342 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2307 Clacu-Chr1:33978162 Clacu03g0498 Clacu-Chr3:5267319 2.10E-119 dispersed
Clacu01g2307 Clacu-Chr1:33978162 Clacu01g2309 Clacu-Chr1:33985810 2.10E-92 proximal
Clacu01g2306 Clacu-Chr1:33971999 Clacu01g2307 Clacu-Chr1:33978162 7.70E-199 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73288 PF07714 PK_Tyr_Ser-Thr 7.50E-50 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2307 - - - 0.0