Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2309 ATGCCCTTTTCTTCAGGAAAGAAGTTCAGAATACGAACTGTCATTGTGATAGTTCTTCCATTTGTGGTACTTTTGGCATTATTGACCATTGGCATCTATATCTTTTTGAGATCCAGAAAGTTGAGCGAAAGACTCAAGACTAGGGATGATGATATTAACTCTATGGACTTCTTGCAATACGACTTGAAGACGATCAAAGATGCAACAGATGACTTTTCTACTGCAAATAAACTTGGACAAGGTGGATTTGGTATCGTTTATAAGGGTAAACTTCTTAATGGACAAGAAGTGGCTGTAAAAAGGCTAGCTCCAGGTTCTCAACAAGGAGACCTCGAGTTTAAGAATGAAGTTCTATTGGTTGCTAAGCTGCAGCACCGGAATCTGGTTCGACTTCTTGGCTTTTGTTTTGAGAGAAATGAAAGACTCCTGATCTACGAGTTTTTACCTAATTCAAGCCTAGATCGTTTCATATTTGATCCAATGCAGCGCCAATATTTGGACTGGGCAAGACGTTACAAAATTATAGTAGGCATCAGTCGTGGCCTCATGTATCTACATGAAGATTCTCGATTCAAAGTCATCCATCATGATCTTAAAGCTAGTAATATATTACTAGATGCAGAACTAAATCCAAAAATTAATGATTTTGGAATGGCAAGATTGTGTTCGTTCAATCAATCCAATGGTGATACAAGTAAAATTAAAGGAACATATGGATACATGGCCCCAGAATATGCACTGTATGGGCATTTCTCAGTAAAATTAGACGTGTTTAGTTTCGGTGTGCTTCTTCTGGAGATCATAAGTGGCCATAAGAACGGTAGCTTTCAAGATGGTGAAAATATAGAGCATCTTTTGAGTTATACATGGGAAAACTGGACGAAAGGAACGATTACAAATATCATAGACCCAATATTGAGTGGAACTTGCATTGATGAAATCATAAGATGCATTCATCTAGGGTTATTATGTGTTCAAGAAGATGCAGCTAGCAGACCAACCATGGCTTCAGTTGTTCTCATGCTGAATAGCAACTCCTTCGCTCTTCCTGTACCATCACCCCCTGGATTTTTGCTGCATAGTAAATCGTCAAACATTGCACGGCATTTTAATTCCACGGAAGGGTCGCAATTTAGCCAATCTGCCAGCATTTGTATTGAAGAAGAATCATCATATCAGTTCAACTCATTTTCTAGAAACCTGGGATGA 1209 38.63 MPFSSGKKFRIRTVIVIVLPFVVLLALLTIGIYIFLRSRKLSERLKTRDDDINSMDFLQYDLKTIKDATDDFSTANKLGQGGFGIVYKGKLLNGQEVAVKRLAPGSQQGDLEFKNEVLLVAKLQHRNLVRLLGFCFERNERLLIYEFLPNSSLDRFIFDPMQRQYLDWARRYKIIVGISRGLMYLHEDSRFKVIHHDLKASNILLDAELNPKINDFGMARLCSFNQSNGDTSKIKGTYGYMAPEYALYGHFSVKLDVFSFGVLLLEIISGHKNGSFQDGENIEHLLSYTWENWTKGTITNIIDPILSGTCIDEIIRCIHLGLLCVQEDAASRPTMASVVLMLNSNSFALPVPSPPGFLLHSKSSNIARHFNSTEGSQFSQSASICIEEESSYQFNSFSRNLG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33985810 33987532 + ClG42_01g0230900.10 Clacu01g2309 241693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2309 402 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524(InterPro)
Clacu01g2309 402 Gene3D Transferase(Phosphotransferase) domain 1 148 348 - -
Clacu01g2309 402 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Clacu01g2309 402 FunFam Cysteine-rich receptor-like protein kinase 28 148 350 - -
Clacu01g2309 402 FunFam Cysteine-rich receptor-like protein kinase 10 36 147 - -
Clacu01g2309 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2309 402 SMART serkin_6 72 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2309 402 ProSiteProfiles Protein kinase domain profile. 72 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2309 402 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 357 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu01g2309 402 SUPERFAMILY Protein kinase-like (PK-like) 57 372 IPR011009 -
Clacu01g2309 402 CDD STKc_IRAK 78 343 - -
Clacu01g2309 402 Pfam Protein tyrosine and serine/threonine kinase 74 339 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2309 Clacu-Chr1:33985810 Clacu03g0502 Clacu-Chr3:5288152 1.60E-117 dispersed
Clacu01g2307 Clacu-Chr1:33978162 Clacu01g2309 Clacu-Chr1:33985810 2.10E-92 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73289 PF07714 PK_Tyr_Ser-Thr 3.70E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2309 - - - 0.0