Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2318 ATGGCGGCTCCATATCCGGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAACGCTGGCTTGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCCCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCTCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCCCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCAAGGATTTCAAAGCGCGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCTGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCCAGCCTCCAAGAGAAGGCTCTCTCGCTCTTGGTTAATCTCAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGTCTCACCGTGGCTGCTCTTCAAGCTAGGTCCGCGGATTGCAGAGCCGTAGCAGCCACGATGCTGACCAGCTTGGCGGTTGTGGAGGTTAACAAGGCTACAATTGGGGCATACCCCTATGCAGTTCGTTCTCTGGTTTATCTCTTACGGAACGGGAATAACAGAGAGCAGAAAGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCTGGGAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCAATTTTGCTTAAAATTGCAAACTCTGGGCTGGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCTAAGTGCAGGGAAGGTCGAGAAGAGATGCAACGGTTCAAAGGATGTGTGGAGATTTTGGGTCGTGTTTTGCGAAATGGAGGCCCAAGAGGAATTCAATATGCTCTTCTAACTCTGACTTCCCTCTGCTGCCATTGCGAGCGAGTGTGCGTGGAGGCAAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACCCATGA 1098 49.73 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARISKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLVNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCREGREEMQRFKGCVEILGRVLRNGGPRGIQYALLTLTSLCCHCERVCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34039420 34040517 - ClG42_01g0231800.10 Clacu01g2318 241702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2318 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515(InterPro)
Clacu01g2318 365 SUPERFAMILY RING/U-box 3 72 - -
Clacu01g2318 365 SUPERFAMILY ARM repeat 88 361 IPR016024 -
Clacu01g2318 365 Pfam U-box domain 6 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g2318 365 Gene3D - 87 267 IPR011989 -
Clacu01g2318 365 Gene3D - 268 365 IPR011989 -
Clacu01g2318 365 SMART arm_5 118 158 IPR000225 GO:0005515(InterPro)
Clacu01g2318 365 SMART arm_5 279 320 IPR000225 GO:0005515(InterPro)
Clacu01g2318 365 SMART arm_5 159 199 IPR000225 GO:0005515(InterPro)
Clacu01g2318 365 SMART arm_5 200 241 IPR000225 GO:0005515(InterPro)
Clacu01g2318 365 PANTHER U BOX DOMAIN-CONTAINING 6 361 - -
Clacu01g2318 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g2318 365 FunFam RING-type E3 ubiquitin transferase 4 76 - -
Clacu01g2318 365 CDD RING-Ubox_PUB 6 53 IPR045210 -
Clacu01g2318 365 SMART Ubox_2 8 72 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g2318 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2318 Clacu-Chr1:34039420 Clacu11g0750 Clacu-Chr11:7341749 2.50E-45 dispersed
Clacu01g2318 Clacu-Chr1:34039420 Clacu05g2724 Clacu-Chr5:34770116 3.30E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2318 K27970 - csv:101213883 658.292