Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2319 ATGGGTAATAATTGCAGAAAGGTTGTTGGGTTTCTTCAATTCTTTGTCATTTCATTCTTACTCTGTTTTTCCCCTCTGTTCTGCGACGCTGCAAATTCATTTACAAAGGGAAGAGGTTTAAGAGATGGTACTAATGAAACCCTCATATCTCTGAATGAGTCCTACGAACTGGGATTCTTCAGCCCAATAAATTCTTCATCACGATACGTCGGAATATGGTATCACAAGATCGAGGAACAGTCTGTTATTTGGGTTGCGAATAGAGATAGGCCACTTCTTAACAGAGATGGGGTTTTGACAATCGGTGACGACGGGAACTTGGTCGTTCTGGATGGCAACAACGTCTCTTTTTGGACAAGCAATATCACAGCGAATGCATTTGATCCCAGAAACTTAACTCTTCATAACCATGGAGAATTGGTTCTTACGAGCGGAGACGACTCATCGAAAGTTCATTGGAGCAGCTTCGAACACCCCACAGATACATTTCTTCCGAATATGGAGGTGAGAGTGAACTCAGAAATTGGCGAGAAACGAATGTTTATGTCATGGAAATCAGAGACAGATCCGGCCGTCGGAAATTACTGTCTGGGTGTGGATCCTCGTGGAGCTGTACAGATTATCATTTGGAATGGGAATAATCGATGGTGGAGAAGCGGCCATTGGGATAGGCAGATTTTTTCTGGGATTCCAAATATGCGTTCTACGTCTTTGTACGGTTTCAAGATTACCCCTGAAAATGGAAATACCATTAGTGTAACTTTTCAGGCACTGAATGATTCCGATAAGCTGAAATTTCAAATCATGTGGAATGGTAAAGAAGCACAGCAACGATTGAATGAAGCAAATCGCAAATGGGAAACGATTCGTTTACTGCCATCTAGCGATTGCGATTTCTACAATTTTTGTGGGGATTTTGGGGTTTGTTCTGAAACGAGTCGTCCTAAGTGTAGCTGCCCTCAAGGGTTTATTCCCAAAAACAAAGAACAATGGGACAGAGGGACCTGGTCAGATGGGTGTCAGAGGAAGACTCCATTGCTTCAGGAGAGAATGAACAGTAATCCGAATGGAACTATTGAAGATGGTGAAGAAGATGGGTTTGTGCCCGTACCATTTGTGAAATTGCCCGATTTCATAACTGGAGTAGTGGTGGATTCGTGTAGAGATAGATGTTCCAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCCTGGAATTGGCTGTGCTACTTGGGATGGACCTTTAAAAGATATTCAGAAATTCGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGATATCTGTCGATAGTGAGAGCAAATTGTCAGCCGGTGTGATTGTATTGATATGTTTAGGAGCGGCAGCTGCCATAGCCATAATAGCGTTTCTGCTATGGAAATTCGGAGGCAAAATGAAAGGTTCACCGGCTGCTTCTTCAAGTGAACCTCAGAACAAAACTGAAGTACCAATGTTTGACCTGAGCAAGAGCAGAGAACTTTCAGCAGAGCTTTCAGGGCCATACGAATTAGGCATAGAAGGCGAACAATTGAGTGGACCAGATTTGCCAATGTTCAATTTCAACTGTATAGTTGCGGCTACTGATAACTTTTCTGAGGAAAACAAGCTTGGCCAGGGAGGCTTCGGCCCTGTATACAAGGGAAAGCTTCCATGTGGACAAGAAGTTGCTGTCAAGAGGCTTTCAGTCCGGTCTGGCCAAGGTCTAGAAGAGTTTAAGAATGAGATTATACTAATAGGAAAGTTACAGCATCGAAACCTCGTCAGACTGTTGGGCTACTGCATTCAAGGAGAGGACAAGATGCTGCTCTATGAATATATGCCAAACAAAAGCTTGGATTGGTTTCTTTTCGATCCAAACAAGCAGGCACTACTAGACTGGAAAAAACGGTTGTCAATCATTGAGGGAATTGCACGAGGGCTGCTATACCTTCATCGAGACTCGAGACTTCTTATTATTCATAGAGATTTGAAAGCTAGCAACATTTTGCTAGATGAAGACATGAATCCAAAGATATCAGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAATGAGGCAACAAATACAATTCGAGTTGTTGGCACATATGGTTACATGGCTCCAGAGTACGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTGGAAATAATCTGTGGTCGGAGGAATACTAGCTTTCGCTCAACTGAATACTTAACCCTTATTAGCTATGCTTGGAAACTTTGGAATGAAGGTAGAGCGATTGAACTTCTTGACCCGTATATTAGCGATTCATCCCCTGAGAATGAAGTATTGAAATGCATACATGTGGCAATGTTGTGTGTTCAAGACTCTCCAGCGTATAGGCCAACATTGCAATCCTTGGTACTAATGCTAGAGAGTGAATCTACATCTCTACCACAGCCAAGACAACCCACCTATACTTCAACAAGAGCCTCGATCGATACAGACTTGTTTACAGAAGGCCACGACATTGTATCGTCAAACGACATAACAGTAACAATGTTGGATGGTAGATAG 2580 42.36 MGNNCRKVVGFLQFFVISFLLCFSPLFCDAANSFTKGRGLRDGTNETLISLNESYELGFFSPINSSSRYVGIWYHKIEEQSVIWVANRDRPLLNRDGVLTIGDDGNLVVLDGNNVSFWTSNITANAFDPRNLTLHNHGELVLTSGDDSSKVHWSSFEHPTDTFLPNMEVRVNSEIGEKRMFMSWKSETDPAVGNYCLGVDPRGAVQIIIWNGNNRWWRSGHWDRQIFSGIPNMRSTSLYGFKITPENGNTISVTFQALNDSDKLKFQIMWNGKEAQQRLNEANRKWETIRLLPSSDCDFYNFCGDFGVCSETSRPKCSCPQGFIPKNKEQWDRGTWSDGCQRKTPLLQERMNSNPNGTIEDGEEDGFVPVPFVKLPDFITGVVVDSCRDRCSNSSSCVAYSDAPGIGCATWDGPLKDIQKFDGVGNTLNIRLAHSDLISVDSESKLSAGVIVLICLGAAAAIAIIAFLLWKFGGKMKGSPAASSSEPQNKTEVPMFDLSKSRELSAELSGPYELGIEGEQLSGPDLPMFNFNCIVAATDNFSEENKLGQGGFGPVYKGKLPCGQEVAVKRLSVRSGQGLEEFKNEIILIGKLQHRNLVRLLGYCIQGEDKMLLYEYMPNKSLDWFLFDPNKQALLDWKKRLSIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEIICGRRNTSFRSTEYLTLISYAWKLWNEGRAIELLDPYISDSSPENEVLKCIHVAMLCVQDSPAYRPTLQSLVLMLESESTSLPQPRQPTYTSTRASIDTDLFTEGHDIVSSNDITVTMLDGR 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34047119 34050436 - ClG42_01g0231900.10 Clacu01g2319 241703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2319 859 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544(InterPro)
Clacu01g2319 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2319 859 SMART blect_4 39 159 IPR001480 -
Clacu01g2319 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Clacu01g2319 859 ProSiteProfiles Protein kinase domain profile. 541 827 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2319 859 CDD STKc_IRAK 547 813 - -
Clacu01g2319 859 CDD B_lectin 43 159 IPR001480 -
Clacu01g2319 859 Pfam PAN-like domain 363 417 IPR003609 -
Clacu01g2319 859 CDD PAN_AP_plant 360 433 - -
Clacu01g2319 859 Gene3D Transferase(Phosphotransferase) domain 1 617 830 - -
Clacu01g2319 859 Gene3D Phosphorylase Kinase; domain 1 516 616 - -
Clacu01g2319 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 511 616 - -
Clacu01g2319 859 PIRSF SRK 5 859 IPR024171 GO:0004674(InterPro)
Clacu01g2319 859 Pfam Domain of unknown function (DUF3403) 814 859 IPR021820 GO:0004674(InterPro)
Clacu01g2319 859 Pfam D-mannose binding lectin 82 185 IPR001480 -
Clacu01g2319 859 SUPERFAMILY Protein kinase-like (PK-like) 526 836 IPR011009 -
Clacu01g2319 859 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Clacu01g2319 859 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 825 - -
Clacu01g2319 859 Gene3D - 29 156 IPR036426 -
Clacu01g2319 859 Pfam Protein tyrosine and serine/threonine kinase 544 810 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2319 859 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 223 IPR036426 -
Clacu01g2319 859 SMART serkin_6 541 812 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2319 859 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 617 820 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2319 Clacu-Chr1:34047119 Clacu03g0539 Clacu-Chr3:5598385 1.40E-211 dispersed
Clacu07g0600 Clacu-Chr7:9460817 Clacu01g2319 Clacu-Chr1:34047119 2.60E-86 transposed
Clacu01g2319 Clacu-Chr1:34047119 Clacu02g0155 Clacu-Chr2:1544760 3.90E-118 wgd
Clacu01g2319 Clacu-Chr1:34047119 Clacu03g0531 Clacu-Chr3:5525118 3.40E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73290 PF07714 PK_Tyr_Ser-Thr 3.50E-47 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2319 - - - 0.0