Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2355 ATGGGTTGTCCAAACTGGAATTTGTTCATGAAGATCTTAATTGGGCTGCTCTTGGTCTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTCCGCGATGTTGCTGCAATCAATGCATTGTTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCGATACAACTCAGTGGCTTGAATTTGGGAGGAGAGCTAGGCACTAGCTTGGACCAATTTGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACATTGCCCGCTACACTGAGAAGTTTTTCGTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCATTTGCCTTGCTAACACAACTAATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGTAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACTTGTCAGGCAACAACTTGAGCGGTCAGCTGCCTCCCTCGATGGCTGATTTGTTCTCCCTTGCTACATTGCACTTGCAGAACAATAAACTTTCTGGGATGCTCGACGCTCTACAGGATCTTCCCTTGTCGGATTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTTAATACTACGATAATTTCGTCTGCACCTGCTTTAGCCCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACAACCAACCAGACAGACAGGTGCAGGTCAGCCATTGTCGTCAGGGATTCCTGGATCGAATGGAGCAAGGACCTTTTTCTCTGTTAAGCGGATAATTTGGATTGTTATTATTGGCACAGCAATATTATTAGCATTGGGATTCTGTCTTCTCGTGTCGATATGTTTGAAAAGAAGCAAGCATCGAGAAGACACCGAGATTCTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCTACAAAGACCTCGGTTGAAGGTGATGACATGGAGAAAGGTCCAAGGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGATTTTACCACCTCAAGGCTACATGATAGACAGGACACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTTCGTAAAGACCTTACGGAGAGTTCGAGCATAAGCATAAATGACTTCCCTGCACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCAATAGTGGCAGCTGAAGTGCCCAGTAGAGTACCTAGAAAACTGAACACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAGGATAATCTTCTGGGGAGAGGCATGCTTGGCAGTGTCTATAGAGCTGAACTTCCAAGTGGGAGGCTTCTGGCTGTTAAGAAACTGGACGGATCCTCTTCAACTAATTGGAGCGATGATGAATTTCACAACCTTGTGTCTAATATATGCCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGCGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGTAAAAACGGCACGCTCTATGATGCACTCCATGTCGACAAGGAGATGCATCAGAAGCTTTCATGGAATGTACGTGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGAAGCCTGTCAACCGCCTACCATGCACCAAAACTTTAAGTCTGCTAACATTCTCTTAGACAATGAGCTAAAACCACAAGTCTCTGACTCTGGCTTAGCTCGGCTGCTTTCTTCAGCTAGTCAGTCGGCTGCACGATTCCTCCCAGCTCATGGTTATAGTGCTCCTGAATTTGAGTTAGGAACTTACACTTACCAAAGTGATATTTTTAGCTTCGGAGTCGTAATGCTAGAGCTTCTCACCGGTCGGAAGTCCTGTGACCGATCACTGCCTCGAGGAGAGCAATTTCTTGTTCGATGGGCTGTTCCAAGGCTGCATGATATTGATGCATTATCAAGAATGGTCGATCCATCTCTTAATGGCATGTATCCTGTTAAGTCGTTATCGCGCTTTGCTGATATTATTTCCTCCTGTATAATGGTCAAGTTATTGGTTGTGTTCTCCGGAGATGGCGCCTTTATTCCAAATGTAAAAACTTTGGAAGACGTCATTACATTATTGGGCATCATTGAAACAACATATCAGCCTCGTGTATTGGCTGAAGATTTATTTTGGACACATCCTTTTACAAATGTTAGCGACCTCCCATCCTTGAATTTAATTGTTCAACCTCCGCTACAACAATTTGTGTATCGGATAACGACAGATGCTGCATATTGA 2436 43.47 MGCPNWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITAIQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPATLRSFSLSANQFTGSIPPAFALLTQLMDLSLNNNLLTGVIPDVFQLLNGLNNLDLSGNNLSGQLPPSMADLFSLATLHLQNNKLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIISSAPALAPSPFAVAPVTVGQPTRQTGAGQPLSSGIPGSNGARTFFSVKRIIWIVIIGTAILLALGFCLLVSICLKRSKHREDTEILRDNADMASKYKPKPTKTSVEGDDMEKGPRETTLKPLDRDRMKDRIMDFTTSRLHDRQDTNGKRKDASNTSFRKDLTESSSISINDFPAPPPPPPFPLLSTQEIAKPIVAAEVPSRVPRKLNTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYRAELPSGRLLAVKKLDGSSSTNWSDDEFHNLVSNICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHEACQPPTMHQNFKSANILLDNELKPQVSDSGLARLLSSASQSAARFLPAHGYSAPEFELGTYTYQSDIFSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMVKLLVVFSGDGAFIPNVKTLEDVITLLGIIETTYQPRVLAEDLFWTHPFTNVSDLPSLNLIVQPPLQQFVYRITTDAAY 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34302513 34309723 - ClG42_01g0235500.10 Clacu01g2355 241739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2355 811 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
Clacu01g2355 811 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 445 553 - -
Clacu01g2355 811 MobiDBLite consensus disorder prediction 341 429 - -
Clacu01g2355 811 SUPERFAMILY L domain-like 35 237 - -
Clacu01g2355 811 Pfam Protein tyrosine and serine/threonine kinase 480 676 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2355 811 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 554 735 - -
Clacu01g2355 811 Pfam Leucine Rich Repeat 98 116 IPR001611 GO:0005515(InterPro)
Clacu01g2355 811 PANTHER LEUCINE RICH REPEAT KINASE 2 71 731 IPR051420 -
Clacu01g2355 811 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Clacu01g2355 811 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Clacu01g2355 811 MobiDBLite consensus disorder prediction 341 407 - -
Clacu01g2355 811 Gene3D Phosphorylase Kinase; domain 1 443 553 - -
Clacu01g2355 811 Gene3D Transferase(Phosphotransferase) domain 1 554 734 - -
Clacu01g2355 811 ProSiteProfiles Protein kinase domain profile. 476 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2355 811 SUPERFAMILY Protein kinase-like (PK-like) 453 733 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2350 Clacu-Chr1:34246279 Clacu01g2355 Clacu-Chr1:34302513 3.30E-16 dispersed
Clacu01g2355 Clacu-Chr1:34302513 Clacu07g1427 Clacu-Chr7:29013938 4.70E-97 dispersed
Clacu01g2354 Clacu-Chr1:34294731 Clacu01g2355 Clacu-Chr1:34302513 3.30E-36 tandem
Clacu01g2355 Clacu-Chr1:34302513 Clacu02g0132 Clacu-Chr2:1367315 3.60E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73291 PF07714 PK_Tyr_Ser-Thr 1.30E-33 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2355 - - - 0.0