Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2385 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACGAAGTTTTCTCACACAGTTTATCATCGATGGGACTCATTAAGATTAAACTCAGTTCCTTTCATCGTCGAACCATCTCGTAATTCTGGCTTGAAATCGAGGCCTACATCAGCTTCCTCCACTCAGAAACCAAATCCTGATATTTCGAAGATTCAGCGAAGCTTCATATCCAATAAACAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAATCTCTCTGAAGTTTTCAAGGAAGCGAAATCCGACAGTAAGAGATTCTCAACTCCAACTCCTCGACTTAGAGAACGAACTAAGGAATTCAAGAACAAGCTATTCAATAAGGACCCGCAAGATTCAAAATCGGCCGATTCCAAGTCATCGTCGAATACCAGTCCCCTGAAACTCCTATCTTCGGGGAAAGGGGGTGATAAGTCAAAGTTCCGGAAAGATTCTTCCTGGACCAAATACTTCGATTCCGGTGGAGGAAAAGTCACCGCGGTCGAAACAGCCGAAGACTGGACTGTTGATCTCTCCAAGTTGTTTGTTGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAATGATGAACCTGTTGCTGTTAAAATTATTAGGGTGCCCGAGGATGACGAAAATGGAACGCTTGCTTCTCGATTGGAGAAACAATTTACCAGAGAAGTTACCCTTTTATCTCGTCTCCATCATCCGAATGTTATAAAGTTTGTAGCTGCGAGTAGGAACCCACCTGTATACTGTGTCATTACTGAATATTTGTCCCAAGGATCATTACGGGCATACTTACACAAACTTGAGCACCAATCCCTCCCTTTGCAAAAACTAATTGAATTTGCTTTAGATGTCGCTCGTGGCATGGAATACCTTCACTCACAAGGCGTAATTCATCGGGATCTTAAGCCTGAGAATGTTCTTATTGATGAAGACTTCCACTTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGAGGCCTTTTTCGACCCATTAGCTGATGATCCCGGAACTTATCGGTGGATGGCACCGGAGATGATCAAACATAAACCTTGTAGTCGAAAGGTCGATGTGTACAGCTTTGGGCTTATGTTGTGGGAAATGGTGTCTGGTGCAATTCCATACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTTAGGCCTGTTATTTCAAGTGATTGTCCATTGGCAATGCGGGCTTTAATCGAGCAATGTTGGTCCCTACAACCGGACAAGAGACCCGATTTCTGGCAGATTGTGAAGGTACTAGAGCAATTCAAATCTTCGCTTGCCCGTGATGGGACACTGAATTTATTAGGTAACCCTCTGTCTAGTTTCCAAGACCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGCCCCCTGCATCCTGAAACCTCGCCCTCTCCTGTGCCGAAACCGAAATTCTCGTAA 1485 44.11 MDEEANSWLRRTKFSHTVYHRWDSLRLNSVPFIVEPSRNSGLKSRPTSASSTQKPNPDISKIQRSFISNKQRSLSPLPESNLSEVFKEAKSDSKRFSTPTPRLRERTKEFKNKLFNKDPQDSKSADSKSSSNTSPLKLLSSGKGGDKSKFRKDSSWTKYFDSGGGKVTAVETAEDWTVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKIIRVPEDDENGTLASRLEKQFTREVTLLSRLHHPNVIKFVAASRNPPVYCVITEYLSQGSLRAYLHKLEHQSLPLQKLIEFALDVARGMEYLHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPCSRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSLQPDKRPDFWQIVKVLEQFKSSLARDGTLNLLGNPLSSFQDHKKGLLHWIQKLGPLHPETSPSPVPKPKFS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34526617 34529018 - ClG42_01g0238500.10 Clacu01g2385 241769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2385 494 MobiDBLite consensus disorder prediction 125 139 - -
Clacu01g2385 494 MobiDBLite consensus disorder prediction 40 80 - -
Clacu01g2385 494 PANTHER SERINE-THREONINE PROTEIN KINASE 80 441 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Clacu01g2385 494 FunFam serine/threonine-protein kinase HT1 268 457 - -
Clacu01g2385 494 Gene3D Phosphorylase Kinase; domain 1 171 267 - -
Clacu01g2385 494 Gene3D Transferase(Phosphotransferase) domain 1 268 459 - -
Clacu01g2385 494 MobiDBLite consensus disorder prediction 85 124 - -
Clacu01g2385 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 CDD STKc_MAP3K-like 190 439 - -
Clacu01g2385 494 MobiDBLite consensus disorder prediction 37 151 - -
Clacu01g2385 494 SMART serkin_6 183 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 FunFam Kinase suppressor of Ras 1 172 266 - -
Clacu01g2385 494 PRINTS Tyrosine kinase catalytic domain signature 366 388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 PRINTS Tyrosine kinase catalytic domain signature 410 432 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 PRINTS Tyrosine kinase catalytic domain signature 301 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 PRINTS Tyrosine kinase catalytic domain signature 347 357 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 Pfam Protein tyrosine and serine/threonine kinase 190 439 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2385 494 SUPERFAMILY Protein kinase-like (PK-like) 167 439 IPR011009 -
Clacu01g2385 494 ProSiteProfiles Protein kinase domain profile. 183 443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2229 Clacu-Chr1:33489435 Clacu01g2385 Clacu-Chr1:34526617 1.70E-89 dispersed
Clacu01g2385 Clacu-Chr1:34526617 Clacu11g1310 Clacu-Chr11:22301673 1.00E-78 dispersed
Clacu05g0135 Clacu-Chr5:1323492 Clacu01g2385 Clacu-Chr1:34526617 7.60E-24 transposed
Clacu01g2385 Clacu-Chr1:34526617 Clacu03g0811 Clacu-Chr3:9132426 2.90E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73292 PF07714 PK_Tyr_Ser-Thr 3.10E-60 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2385 - - - 0.0