Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2389 ATGGACGACCACCACAATCCCCACCACCACCACCACCACCACCACCACCATGAACTCCCCCCATTCCCCTCCGCCGCCGCCATTCTCCACTCTCCTCCTCCTCCTCCTCCTCAAAATTCATGTTATCTCCCACCTAGTCTTTCTCAAACTTGCTTGGGATTCTCCTCCTCCGCCCCACAATCCTATTTTTACTCAAATCCTCCTCCTCTACATGAACAACTTCCATCCCATTTCCCACCTTCTTCCACCTTCCTCACTTATGGTTTCAATGAGCCAACTAATTCTCTATTCCCTAAAGATGAAGGAAGAAGGGCTATGGATGCTTGGAGTACTAAAGTCGCTCGTACCAACCGAAGACTCGCCCGCCAAAGAACCCTTACTTTAACCCGAACCACTTCTTCTTCCTCTTCTGCAGCTTATAATGGTTGTTATAATGATGAATATTCTAAGGGCTTAACAATAACCCACTTCCCAAACACTGATCCCTCTCACAATAATCGCAATCTTTTTACCTTTTGCACTCCAGATAACAAGATTTTGAGAATGCTGCTGAAGAAGGAGCTGAAGAACAGTGATGTTGGATCTTTGGGCAGGATTGTCCTCCCCAAGAGGGAGGCAGAAGAGAACCTTCCATTTCTCACTGATAAGGAAGGTATCCAAATTGTGGTCAGAGATGTGAACTCAATCAGAAAATGGACCATGAAATACAAGTACTGGGCAAACAACAGAAGTAGAATGTATGTTCTGGAGAACACAGGGGATTTCGTTAGACAAAATGGTCTGTTGATGGGAGATTCAATGACACTATACGAGGATGACTGCAAGAACCTCTACGTGGCGGTTGAAAAAGGTGAGAATCATTCGAGAATGGAAGAAAATAACAAGCAGCAGCAGCAGCAGCAGCAGCAGTGTGGTAATTTGTCAAACATGGAAATTAAAGACGAAGAAGAAGATGCTTCATTAGCTTTGTTGATCGAAGAGCTCAAACACAAAGCCGACGACGACCCCCACGCGCCGCCCTGCTGCAACGACTATTCCTACTTCACCGCTGCTACTATGATGGGAGGTGCTACAATAAAAGGGAATTATAATAACATTAATAATAACAATAATGCGACTAATACTAATTACAAGGAAGTAATGGAGGATCTGCAGGGGATTAATAACAACAACAACAATAATAATAATAATAATAATAATGGGAATGGGTTTGAAGATTGCTTTGGAGGGCTTGATACTCTGCCGGAAGTAACTGGATTCAAGTTCCCTCTCTTTGACTATTTCAGCAACAATGATAGAACGTGA 1305 43.68 MDDHHNPHHHHHHHHHHELPPFPSAAAILHSPPPPPPQNSCYLPPSLSQTCLGFSSSAPQSYFYSNPPPLHEQLPSHFPPSSTFLTYGFNEPTNSLFPKDEGRRAMDAWSTKVARTNRRLARQRTLTLTRTTSSSSSAAYNGCYNDEYSKGLTITHFPNTDPSHNNRNLFTFCTPDNKILRMLLKKELKNSDVGSLGRIVLPKREAEENLPFLTDKEGIQIVVRDVNSIRKWTMKYKYWANNRSRMYVLENTGDFVRQNGLLMGDSMTLYEDDCKNLYVAVEKGENHSRMEENNKQQQQQQQQCGNLSNMEIKDEEEDASLALLIEELKHKADDDPHAPPCCNDYSYFTAATMMGGATIKGNYNNINNNNNATNTNYKEVMEDLQGINNNNNNNNNNNNNGNGFEDCFGGLDTLPEVTGFKFPLFDYFSNNDRT 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34551609 34555223 - ClG42_01g0238900.10 Clacu01g2389 241773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2389 434 Gene3D - 173 299 IPR015300 -
Clacu01g2389 434 MobiDBLite consensus disorder prediction 1 42 - -
Clacu01g2389 434 SMART B3_2 184 285 IPR003340 GO:0003677(InterPro)
Clacu01g2389 434 MobiDBLite consensus disorder prediction 285 306 - -
Clacu01g2389 434 ProSiteProfiles B3 DNA-binding domain profile. 184 285 IPR003340 GO:0003677(InterPro)
Clacu01g2389 434 Pfam B3 DNA binding domain 186 281 IPR003340 GO:0003677(InterPro)
Clacu01g2389 434 MobiDBLite consensus disorder prediction 26 42 - -
Clacu01g2389 434 SUPERFAMILY DNA-binding pseudobarrel domain 183 281 IPR015300 -
Clacu01g2389 434 Coils Coil 377 397 - -
Clacu01g2389 434 CDD B3_DNA 183 279 IPR003340 GO:0003677(InterPro)
Clacu01g2389 434 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 124 310 IPR044800 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2389 Clacu-Chr1:34551609 Clacu09g0915 Clacu-Chr9:8522117 8.60E-29 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47115 PF02362 B3 7.30E-16 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2389 K09287 - csv:105436043 511.916