Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2395 ATGGCTCTGAATCTCAGACTCCATACACTCATATTCCTTCTCCTTCTCTTCTCCTTCTGTACTCCATCATTTTCAGATTCAGTTCCATCTCCCAATTCCCAATGCGAAGCTCAGCTGCAACAAGGCTGCCATGACAGAGCCGAGGCCCTCAAACTCAAGCTCATCGCCATCGCTTCCATTTTAGTCGCGAGCATGATCGGCGTTTGTCTTCCCCTCTTCTCCCGCGCCGTGCCGGTGCTTCAACCAGAGAGAAAGCCCTTCGCAATCGTTAAGGCATTTGCCTCCGGTGTGATTCTAGCCACTGGATATATGCACGTTCTCCCCGATTCCTTCGATTGCTTGACATCCCCCTGTTTGCCAGAGAATCCATGGCGGAAATTCCCTTTCCCAACATTCATAGCAATGCTTTCCGCTGTTATGACTCTAATGTTGGACTCGTTTTCAATGAGTCGCTACAATAAAAAGTTGATGCAGGATCAAGAAGCCGCAGACGAGGAGGAGAACGAGGATCGCAAGGAAATCAGTGACAATTTTGGGAAAGAAGAAGGAATAATCGAGAAAAAACTTGGTTCGCAATTGCTACGGTACCGTGTTGTTGCTCAGTTATTAGAAGCGGGGATCGTTGTGCATTCGGTGGTGATAGGGCTTTCAATGGGGGCTTCAGATAATCCGTGTACCATAAGACCGCTCATCGCTGCTCTGTGCTTTCATCAGCTGTTTGAAGGGATGGGGCTTGGAGGGTGCATTTTGCAGGCGGAATATAGGTTGAAGATGAAGGCGATAATGGTGTTTTTCTTCTCGGTTACAACGCCGTTTGGAATAGCATTGGGCATTGGGTTGTCGAATGTGTACAGTGAGAACAGTCCCACGGCTCTTATAGTTGTGGGAATTTTGAATGCTTTATCTGCTGGGTTGTTGAATTATATGGCATTGGTTGATTTGTTGGCGCATGATTTCATGGGGCCTAAATTGCAAGCCGATATCAAGCTGCAAATATGGGCTTATGTTGCTGTTTTGTTCGGCGTTGGTGGCATGTCATTGATGGCAAAATGGGCTTAG 1059 47.31 MALNLRLHTLIFLLLLFSFCTPSFSDSVPSPNSQCEAQLQQGCHDRAEALKLKLIAIASILVASMIGVCLPLFSRAVPVLQPERKPFAIVKAFASGVILATGYMHVLPDSFDCLTSPCLPENPWRKFPFPTFIAMLSAVMTLMLDSFSMSRYNKKLMQDQEAADEEENEDRKEISDNFGKEEGIIEKKLGSQLLRYRVVAQLLEAGIVVHSVVIGLSMGASDNPCTIRPLIAALCFHQLFEGMGLGGCILQAEYRLKMKAIMVFFFSVTTPFGIALGIGLSNVYSENSPTALIVVGILNALSAGLLNYMALVDLLAHDFMGPKLQADIKLQIWAYVAVLFGVGGMSLMAKWA 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34594856 34595914 - ClG42_01g0239500.10 Clacu01g2395 241779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2395 352 NCBIfam ZIP zinc/iron transport family 35 352 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Clacu01g2395 352 PANTHER ZINC/IRON TRANSPORTER 47 351 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Clacu01g2395 352 Pfam ZIP Zinc transporter 50 349 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Clacu01g2395 352 Coils Coil 149 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0933 Clacu-Chr1:11105952 Clacu01g2395 Clacu-Chr1:34594856 4.80E-107 dispersed
Clacu01g2395 Clacu-Chr1:34594856 Clacu11g1868 Clacu-Chr11:29811139 5.60E-79 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2395 K14709 - csv:101204028 548.125