Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2411 ATGCCTTTATGGCCCTTCCTCTTCCTCTTCTGTTTCCCTCTGTTTTCCTTCTCCCTCAACCAAGAGGGTTATGTTCTCTACACCTTTAAGCGCTCCGTTGAGGATCGTAACAATGTCTTCTCCACTTGGCACGAAGCCGACCCCGATCCCTGTTCATGGGATGGCATCACCTGCGACGCCCATCATCACGTTATTTCTGTTGATCTCTCTAGCTCTCGTATTTCTGCTTCTTTCCCTCTTCAACTCTGTAAGCTTCCGCATCTCCTCTACCTTTCTCTTTACAACAATACCTTCCATTCCCTTCTTCCCGCCGGGATTTCCAATTGTAGCAGCCTCGAGTTTCTTGACCTTAGTCAAAATCTCCTCACCGGTCCTCTGCCTCCCTCCATTGCTGATTTGCCCAATATCCGATACTTGGATTTGTCTGGCAACAATTTCTCCGGCGAAATACCACCCTCCTTCGGTCGGTTTCGGAAACTTGAGGCGTTTTCAATTGTTTTGAATCTTGTGAGTGGTACAATTCCTCCGTTTCTTGGTAACATTACTACTCTTAGGATGTTGAATATGTCTTACAACTCGTTTTCGCCCGGAAGAATCCCGCCGGAGCTGGGTAGTCTGGTGAATCTTGAGGTTCTTTGGTTGACGGCTTGTAATTTAGTGGGGGAGATTCCTGAGTCGCTGGTAGGTCTGGAGCAACTTGTTCTTCTAGATTTGAGCATTAACAATCTTACTGGGCCGTTCCCGCGGGCGCTGACGGAGTTAACCCACGTGACCCAGATTGAGTTATTTGGCAATAAGTTAACCGGCGTGTTACCGAATGAGTTTTCGAAACTCAAGTCGCTGCGGTTGTTCGACATCTCGATGAATAATCTCGCTGGGCCAATTCCGGGTAGCTTGTTTGAGTTGCCGCTTGAAAGTCTTAATGCGTTTGAGAATAATTTCGAGGGGAGCTTGCCGGAAAGCATAGGGGAGTCGAGGACTTTGAGAGAGATAAAGCTATTTGCGAACAGATTCACAGGGTCGTTACCAACACATTTGGGGAAATATTCACCTCTAGAATCGTTGGACATTTCGGACAACTTCTTTTCCGGCAGGCTCCCCGAGAACTTGTGTGAGAAGGGGGCATTGATAGAGATAATGTTGATCAACAACCTGTTTTCCGGCGAACTCCCGTCGAGTCTTGGTAATTGTCAGAGTCTGACCAGGATGCGATTAGGGAACAACAATTTTACGGGTTCTGTACCAGAAAATGTATGGGGACTTTCAGATGTTGCTCTTATGGAACTTGCAAACAACTCCTTCTCTGGCCCAATCTCAAAGAAAATAGCCAACGCCAAGATGCTGAATTTGCTTCTTATTTCTAATAACAATTTCTCAGGAACAATTCCAGAGGAGATTGGTTCTTTGGAGAATATGGTAGAGTTTTCCGCCGACCATAACAAGTTCATAGGAAATATCCCTGAAAACCTTACAAAAATGGATCGACTTGCTAAGTTAGATCTTCAAAACAACAGACTTTCGGGGTTGCTCAACTACAGGCTTGATGCCTGGGAGAGGCTGAATGAGCTCAATCTGGCCAATAATAACTTCTCTGGGCCAATTCCCCCGGAAATTGCTAGCTTGCCAGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCTGGGGAAATCCCAAATGGGTTACAGAATTTGAACCTCAATGTTCTGAATCTGTCATACAACCAATTAACTGGGACACTTCCTTCATATTTCGAGAGATCAATGTACAAAAATAGCTTTCTAGGCAATCCTGATTTATGTAGGGAGGAAAACGATGCGTGTCATACAGTTCAGTCTACAAGAAATGGAGGAGGAGGAGGAGGAGGTTGTGATGAGGGAGGAGGTTGCATTTGGCTGCTGCGATCCTTCTTTGTATTTGCAGGTTTAATTTTCTTTGTGGGAGTGGTTCTATTCCACGTCAAGTACAGGACATTCGTCAAGGCAAGAAGTCTCAACATCAAATCAAAATGGACAATGATATCGTTCCAAAAGCTCTCTTTTGGTGAGGACGAGATTGTGGGTTCCCTAGATGAACACAATGTGATAGGCAGTGGAGGCTCTGGCCTAGTTTACAAGGTTGCTCTCGCCAATGGCGAAACCATTGCAGTTAAGAAACTTTGGCCCGAGCTGCCCAATGACTGCCCGAGCATCGATCTGGAGAAAAATTGGACTGAAATTAATGCTTTTGATGCAGAAGTGAAGACTTTGGGTGAAATCAGGCACAAAAACATAGTGAAACTTTTGTGTTGTTGTACCAATGGAGACTGCAAGCTTTTGGTCTTTGAATACATGCCTAATGGGAGCTTGGGTGATATGCTTCATGGTAGTAGAAGTGAGTTATTGGATTGGCCAACACGATACAAGATAGCCTTGGATGCTGCTGAGGGGCTTTCTTATCTTCATCATGATTGTGTTCCTCCAATTGTACACAGAGATGTCAAGTCCAATAACATTTTGTTGGATGCTGAATTCGGAGCTAAGATAGCAGATTTTGGAGTAGCTATGGCTGTCGATATATCCCAGGGTAAATCCATGTCAGTGATTGCTGGTTCTTGTGGCTATATTGCCCCAGAGTATGCTTATACATTGAAAGTGAACGAGAAGAGCGACATCTTTAGCTACGGGATGGTTATCCTTGAATTGATAACGGGGAAGCGGCCGATCGACTCCGAGTTCAAAGAAAACGATCTGGTGAAATGGGTATGCACCACTTTAGAAGAAGAAGGCGTTAACCATATTCTAGACCCCAAATTGGATTCGTGTCACCAGGAGGAAATGTTGAAGGTCCTCAACATAGGCCTCCTATGCAGCAGTCCTCTACCTATCAACCGCCCATCCATGAGACGAGTGGTTACAATGTTGTTAGAAGTTCGCACGGATAGCAATTCGAAGATTGGAAGGAGAAAGGGAAGATTGACACCATATTATTTCGAGGATGTTTCGGATAGTGGAAATGTGGTATAG 3006 44.84 MPLWPFLFLFCFPLFSFSLNQEGYVLYTFKRSVEDRNNVFSTWHEADPDPCSWDGITCDAHHHVISVDLSSSRISASFPLQLCKLPHLLYLSLYNNTFHSLLPAGISNCSSLEFLDLSQNLLTGPLPPSIADLPNIRYLDLSGNNFSGEIPPSFGRFRKLEAFSIVLNLVSGTIPPFLGNITTLRMLNMSYNSFSPGRIPPELGSLVNLEVLWLTACNLVGEIPESLVGLEQLVLLDLSINNLTGPFPRALTELTHVTQIELFGNKLTGVLPNEFSKLKSLRLFDISMNNLAGPIPGSLFELPLESLNAFENNFEGSLPESIGESRTLREIKLFANRFTGSLPTHLGKYSPLESLDISDNFFSGRLPENLCEKGALIEIMLINNLFSGELPSSLGNCQSLTRMRLGNNNFTGSVPENVWGLSDVALMELANNSFSGPISKKIANAKMLNLLLISNNNFSGTIPEEIGSLENMVEFSADHNKFIGNIPENLTKMDRLAKLDLQNNRLSGLLNYRLDAWERLNELNLANNNFSGPIPPEIASLPVLNYLDLSGNQFSGEIPNGLQNLNLNVLNLSYNQLTGTLPSYFERSMYKNSFLGNPDLCREENDACHTVQSTRNGGGGGGGCDEGGGCIWLLRSFFVFAGLIFFVGVVLFHVKYRTFVKARSLNIKSKWTMISFQKLSFGEDEIVGSLDEHNVIGSGGSGLVYKVALANGETIAVKKLWPELPNDCPSIDLEKNWTEINAFDAEVKTLGEIRHKNIVKLLCCCTNGDCKLLVFEYMPNGSLGDMLHGSRSELLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGAKIADFGVAMAVDISQGKSMSVIAGSCGYIAPEYAYTLKVNEKSDIFSYGMVILELITGKRPIDSEFKENDLVKWVCTTLEEEGVNHILDPKLDSCHQEEMLKVLNIGLLCSSPLPINRPSMRRVVTMLLEVRTDSNSKIGRRKGRLTPYYFEDVSDSGNVV 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34704091 34707282 + ClG42_01g0241100.10 Clacu01g2411 241795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2411 1001 SUPERFAMILY L domain-like 304 605 - -
Clacu01g2411 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 179 271 - -
Clacu01g2411 1001 Gene3D Phosphorylase Kinase; domain 1 669 777 - -
Clacu01g2411 1001 SMART serkin_6 690 990 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2411 1001 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515(InterPro)
Clacu01g2411 1001 Pfam Leucine rich repeat 95 146 IPR001611 GO:0005515(InterPro)
Clacu01g2411 1001 Pfam Leucine Rich Repeat 208 230 IPR001611 GO:0005515(InterPro)
Clacu01g2411 1001 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515(InterPro)
Clacu01g2411 1001 Pfam Leucine Rich Repeat 566 586 IPR001611 GO:0005515(InterPro)
Clacu01g2411 1001 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515(InterPro)
Clacu01g2411 1001 FunFam Receptor-like protein kinase HSL1 303 610 - -
Clacu01g2411 1001 Pfam Leucine rich repeat N-terminal domain 19 59 IPR013210 -
Clacu01g2411 1001 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524(InterPro)
Clacu01g2411 1001 SUPERFAMILY Protein kinase-like (PK-like) 686 968 IPR011009 -
Clacu01g2411 1001 ProSiteProfiles Protein kinase domain profile. 690 969 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2411 1001 Pfam Protein kinase domain 692 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2411 1001 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 971 IPR050647 -
Clacu01g2411 1001 Gene3D Ribonuclease Inhibitor 273 612 IPR032675 -
Clacu01g2411 1001 SMART LRR_typ_2 206 230 IPR003591 -
Clacu01g2411 1001 SMART LRR_typ_2 254 277 IPR003591 -
Clacu01g2411 1001 SMART LRR_typ_2 133 157 IPR003591 -
Clacu01g2411 1001 SMART LRR_typ_2 493 516 IPR003591 -
Clacu01g2411 1001 SMART LRR_typ_2 85 109 IPR003591 -
Clacu01g2411 1001 SMART LRR_typ_2 541 564 IPR003591 -
Clacu01g2411 1001 SMART LRR_typ_2 278 302 IPR003591 -
Clacu01g2411 1001 Gene3D Transferase(Phosphotransferase) domain 1 778 988 - -
Clacu01g2411 1001 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 778 984 - -
Clacu01g2411 1001 Gene3D Ribonuclease Inhibitor 19 171 IPR032675 -
Clacu01g2411 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2411 1001 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 178 - -
Clacu01g2411 1001 Gene3D Ribonuclease Inhibitor 172 268 IPR032675 -
Clacu01g2411 1001 SUPERFAMILY L domain-like 42 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2411 Clacu-Chr1:34704091 Clacu02g0240 Clacu-Chr2:2264648 3.60E-131 dispersed
Clacu01g2411 Clacu-Chr1:34704091 Clacu03g0792 Clacu-Chr3:8907345 3.60E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73293 PF00069 Pkinase 3.80E-41 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2411 - - - 0.0