Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2417 ATGGGTGCTCTCATCGATCTCAATACTACTGAAGAAGATGAATCTCCCTCTTCTGCTGGTTCCTCTGTTTCTTCTTCCTCCGCTTCTGCTTTAACCTCCTCTCCTTCACCTTCTGTTACTTCCTCAATTTGCTTGGAGCTATGGCATGCTTGTGCTGGACCTCTCACCTCTTTGCCCAAGAAAGGGAGTTTGGTTGTGTATTTGCCGCAGGGTCACTTCGAGCTGATTCAAGAATTTCCGGCTACGCCTTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCATGCTGAAGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCTTTGTTTCCTGAAAACGAGAAAATGGAGCACAAGATGCAGGAAGAGATGAACAATGACAGTGAGGAGGAGGATGTTGAAGAAGGTGAGAAGACTACAACACCCCACATGTTCTGCAAGACCCTTACCGCTTCTGACACCAGTACTCATGGAGGCTTTTCCGTCCCTAGACGTGCAGCTGAGGATTGCTTCCCACCATTGGACTATAATCAACAGAGGCCTTCACAAGAGCTAGTAGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCTTTCGTGAACAAGAAAAGGCTTGTTTCTGGAGATGCAGTGCTTTTTCTTAGGGGCAACGATGGTGAATTAAGACTGGGAATTCGAAGAGCTGCACAGCTTAAAAATGGTTCTGCCTTTTCCAATATTTGCAGTCAGCAGCTCAACTCTAGTAGTGTCATGGATGTGGTTAATGCGATATCTACAAAAAGTTCCTTTAGTGTATACTACAATCCCAGGGCTACCTCTTCACAGTTTGTCTTACCCTTTCACAAGTTCTTGAAGAGCATTAACCATTCTTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTTGAAACCGAAGATGCTGCAGATCGAAGACATTCTGGACATATAACTGGAGTAGGCGATGTGGATCCTATCAGATGGCCAGGATCAAGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAACTAACAGGCATGGCAGGGTTTGCCCTTGGGAGATTGAGCCCTCTGGTTCTGTCTCTTTGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGAACCAGGATTGGGCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCAAATGGGATTGGAGCATCAGACTTTGGGGAATCTTTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGACGGTGAGGAAAACAACCGTAATCCACCCGAAAAGAGGAGATTGTTTCCTGGTTTACATGGTTCTGGGATAGCTTTGATGAGAAATGGTCCAAGAATCCCACTTATTAACTCCGAAACTTCCTCCCGGGGTATCGTGTTTGATGAATCCTTTCAATACCATAAGGTCTTGCAAGGTCAAGAAATATTTCCAAGTCCCTTTTATGGTAGGTCCATGGCCACCAATGAAGTTAAGGCAAGTGGTGGTTGTGGCCCTGTCGATGGCATTCGATTATCTAGGACTAAAGATGGATGGCCCATGACAATGCAATGTGAAAATTTCCTCACACGGTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCTTCTGTATTAATGTTTCAGCAGTCGATGGTTCCTGTTCAAAGCTTTAATTCACATAACCGTGTTGCAGAACAGAGGATTATGAACAAAAGTACATCCCATAATTCTGGGACAGCATTTATCACTAACCATAGCTCGAATACTGAAGTCAACCCACAAGGCATGTGTCCCACTTCATTGGGCGAGCAGAATCACCTCGGCCTATCACATCCTTCAACAACAACAGCACCAGCAGCATTTACAGGCAGTAAAGATCTATCTTCAACTTGCAAACCTGGCTGTAGATTGTTTGGTTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGCTTCTCCAGCAACAACTTCCAATAATGCAGGAACAACCACTGTTTTGTCCAATGTTGGAGTACAATGTCCTTTGAAGTCTCCTCTCATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTTTTCAGTACCACTTTGCAAATTACAGTACCTACTACTGA 2187 45.13 MGALIDLNTTEEDESPSSAGSSVSSSSASALTSSPSPSVTSSICLELWHACAGPLTSLPKKGSLVVYLPQGHFELIQEFPATPYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEKMEHKMQEEMNNDSEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKNGSAFSNICSQQLNSSSVMDVVNAISTKSSFSVYYNPRATSSQFVLPFHKFLKSINHSFSVGMRFRLSFETEDAADRRHSGHITGVGDVDPIRWPGSRWRSLMVRWDDGETNRHGRVCPWEIEPSGSVSLSSNLVPPGLKRTRIGLSSTKLEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGEENNRNPPEKRRLFPGLHGSGIALMRNGPRIPLINSETSSRGIVFDESFQYHKVLQGQEIFPSPFYGRSMATNEVKASGGCGPVDGIRLSRTKDGWPMTMQCENFLTRSSIPSVQVSSPSSVLMFQQSMVPVQSFNSHNRVAEQRIMNKSTSHNSGTAFITNHSSNTEVNPQGMCPTSLGEQNHLGLSHPSTTTAPAAFTGSKDLSSTCKPGCRLFGFSLTEEKNVGNTDKASPATTSNNAGTTTVLSNVGVQCPLKSPLMSKVVGSNCTKGAFQYHFANYSTYY 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34746099 34750458 - ClG42_01g0241700.10 Clacu01g2417 241801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2417 728 MobiDBLite consensus disorder prediction 1 36 - -
Clacu01g2417 728 FunFam Auxin response factor 148 252 - -
Clacu01g2417 728 SUPERFAMILY DNA-binding pseudobarrel domain 145 260 IPR015300 -
Clacu01g2417 728 Pfam Auxin response factor 276 357 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g2417 728 Gene3D - 313 387 - -
Clacu01g2417 728 MobiDBLite consensus disorder prediction 10 36 - -
Clacu01g2417 728 Gene3D - 148 252 IPR015300 -
Clacu01g2417 728 CDD B3_DNA 148 250 IPR003340 GO:0003677(InterPro)
Clacu01g2417 728 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 680 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g2417 728 FunFam Auxin response factor 313 384 - -
Clacu01g2417 728 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677(InterPro)
Clacu01g2417 728 SMART B3_2 150 252 IPR003340 GO:0003677(InterPro)
Clacu01g2417 728 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2417 Clacu-Chr1:34746099 Clacu02g2157 Clacu-Chr2:34720755 2.70E-128 dispersed
Clacu01g2417 Clacu-Chr1:34746099 Clacu09g0945 Clacu-Chr9:8817222 8.80E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47123 PF02362 B3 1.60E-21 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2417 K14486 - csv:101220018 1299.65